snakemake / snakefaceLinks
The snakemake interface, currently works like a notebook (under development)
☆19Updated 3 years ago
Alternatives and similar repositories for snakeface
Users that are interested in snakeface are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last month
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- A Github action for running a Snakemake workflow☆59Updated 2 months ago
- Monitor computational workflows in real time☆74Updated last year
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- ☆30Updated 3 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Docker image of JBrowse Genome Browser☆15Updated 4 years ago
- Nextflow language support for Visual Studio Editor☆34Updated last week
- ☆13Updated 7 years ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆35Updated 7 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- a minimal, scriptable genome browser for python☆51Updated 8 months ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated last month
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- Testing building mulled containers for multi-requirement tools.☆76Updated last week
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Reference genome resource manager☆75Updated last year
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 2 months ago
- Flexible omics pipeline☆18Updated 3 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 4 months ago