Alternatives and similar repositories for snakeface:

Users that are interested in snakeface are comparing it to the libraries listed below

• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆22Updated 3 months ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 6 months ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 4 months ago
• InscriptaLabs / BioCantor
  ☆21Updated last year
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆71Updated 9 months ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated last week
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆58Updated last month
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆45Updated this week
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆33Updated 3 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 2 months ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆19Updated 3 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆49Updated 2 months ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆17Updated this week
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated 3 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆46Updated 5 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆44Updated last year
• nextflow-io / nf-prov
  ☆29Updated 3 weeks ago