The snakemake interface, currently works like a notebook (under development)
☆20Mar 12, 2026Updated 2 months ago
Alternatives and similar repositories for snakeface
Users that are interested in snakeface are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.☆23Apr 2, 2026Updated last month
- Welcome page and service overview☆18Mar 29, 2023Updated 3 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- Simulation of rare and common variants based on 1000 genomes data☆19Sep 24, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Intro to git for scientists and other regular people☆12Nov 1, 2021Updated 4 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15Updated this week
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- A repository to host extended examples and tutorials.☆11Dec 17, 2025Updated 5 months ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 2 months ago
- Documentation of the Snakemake-Workflows project☆158Feb 2, 2022Updated 4 years ago
- A R package to create a minimal template for scientific manuscripts in .docx☆11Jan 15, 2022Updated 4 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A basic science lab framework aimed at reproducibility and lab management.☆14Mar 26, 2026Updated last month
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 7 years ago
- Package to extend Airflow functionality with CWL v1.0 support☆12Jun 12, 2019Updated 6 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 2 months ago
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 5 years ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated 2 months ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆20Apr 23, 2025Updated last year
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Dec 23, 2021Updated 4 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- Browser extension for retrieving gene information☆16Oct 27, 2025Updated 6 months ago
- ☆148May 6, 2024Updated 2 years ago
- ☆21Dec 26, 2025Updated 4 months ago
- Mulled - Automatized Containerized Software Repository☆68Mar 18, 2024Updated 2 years ago
- Colorized cat command in Python. Uses Pygments to do automatic syntax highlighting.☆13Dec 12, 2019Updated 6 years ago
- Conveniently issue messages, warnings, and errors☆12Jul 7, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ixgbe driver for Redox based on ixy.rs☆11Jul 30, 2019Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- R Package for making a directory of presentations☆14Dec 10, 2018Updated 7 years ago
- A userspace tunnel between two hosts mapping ports on client machine to addresses reachable from server machine.☆18Feb 25, 2022Updated 4 years ago
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- Microsatellite Instability Classification using Multiple Instance Learning☆28Mar 3, 2025Updated last year
- ALFA: Annotation Landscape for Aligned Reads☆14Jun 30, 2020Updated 5 years ago