nh13 / snakeparseLinks
Making Snakemake workflows into full-fledged command line tools since 1999.
☆51Updated 7 years ago
Alternatives and similar repositories for snakeparse
Users that are interested in snakeparse are comparing it to the libraries listed below
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- sort genomic data☆36Updated last week
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- BigWig and BAM utilities☆98Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 5 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year