nh13 / snakeparse
Making Snakemake workflows into full-fledged command line tools since 1999.
☆51Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for snakeparse
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- ☆23Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated last week
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ☆19Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆30Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last month
- Adapters for trimming☆30Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago