A Variant Call Format reader for Python.
☆59May 6, 2025Updated last year
Alternatives and similar repositories for PyVCF3
Users that are interested in PyVCF3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification of structural variations☆12Jul 22, 2022Updated 4 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Oct 30, 2024Updated last year
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 5 years ago
- deploy a snakemake pipeline directly from version control (under development)☆26Jun 18, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 15, 2023Updated 3 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated 6 months ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago
- ☆13May 30, 2023Updated 3 years ago
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 7 months ago
- Tool suite for HGVS variant descriptions☆52Apr 17, 2026Updated 3 months ago
- The uncompromising Snakemake code formatter☆195Jun 26, 2026Updated 3 weeks ago
- LoFreq Star: Sensitive variant calling from sequencing data☆113Oct 16, 2025Updated 9 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆17Mar 7, 2026Updated 4 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆291Updated this week
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆29Jun 30, 2026Updated 3 weeks ago
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆330Updated this week
- vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration☆40Sep 9, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Jul 2, 2026Updated 3 weeks ago
- Structural variant benchmark☆24Mar 4, 2025Updated last year
- DRAGEN open-source mapper☆189Sep 8, 2023Updated 2 years ago
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated last month
- ☆21Dec 26, 2025Updated 6 months ago
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- Basic UPD caller☆12Aug 23, 2021Updated 4 years ago
- BIH Cluster Wiki☆19Jun 22, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated last month
- Monitor computational workflows in real time☆73Jul 6, 2026Updated 2 weeks ago
- Bash and python scripts to run a keras-implemented V-Net 3D segmentation model.☆10Apr 14, 2026Updated 3 months ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 11 months ago
- Read visualizer for structural variants☆85Aug 18, 2018Updated 7 years ago
- ☆13Oct 14, 2017Updated 8 years ago
- Parsing MHC nomenclature in the wild☆21Updated this week