Flexible and efficient parsing, interpreting and editing of sequencing reads
☆45Dec 8, 2025Updated 2 months ago
Alternatives and similar repositories for splitcode
Users that are interested in splitcode are comparing it to the libraries listed below
Sorting:
- Quality of life improvements for Bioinformatics in Python.☆31Feb 17, 2026Updated last week
- machine-readable file format for genomic library sequence and structure☆128Feb 9, 2026Updated 2 weeks ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 2 months ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 4 months ago
- Submit slurm sbatch jobs without a script☆73Aug 7, 2025Updated 6 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- long read RNA-seq quantification☆105Feb 4, 2026Updated 3 weeks ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 5 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Dec 3, 2025Updated 2 months ago
- ☆27Feb 10, 2025Updated last year
- Cromwell output organizer☆13May 18, 2021Updated 4 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 5 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Visualization toolkit for differential splicing events☆17Nov 3, 2025Updated 3 months ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated last month
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Multithreaded read analysis☆23Feb 19, 2026Updated last week
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Fast sequencing data quality metrics☆31Sep 10, 2025Updated 5 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated last month
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆24Oct 19, 2023Updated 2 years ago
- ☆16Jan 15, 2025Updated last year
- Tools to work with GWAS-VCF summary statistics files☆130Feb 2, 2026Updated 3 weeks ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 6 months ago