pachterlab / splitcode

Related projects ⓘ

Alternatives and complementary repositories for splitcode

• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆52Updated 3 weeks ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆57Updated 8 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆56Updated last month
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆92Updated 7 months ago
• billzt / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆47Updated 4 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆31Updated 6 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆28Updated 11 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated this week
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆13Updated 4 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆38Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆46Updated last month
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆21Updated last week
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆19Updated 6 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 3 weeks ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated last month
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• AndreasHeger / gat
  Genomic Association Tester
  ☆29Updated last year
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆22Updated 6 months ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆24Updated 3 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆84Updated 6 years ago
• LappalainenLab / lorals
  ☆33Updated last year
• gencorefacility / reform
  Modify existing reference fasta and gff3/gtf files to include a new sequence
  ☆30Updated this week
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆29Updated 2 years ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• kundajelab / idr
  IDR
  ☆30Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆57Updated 3 months ago