☆26Jun 9, 2026Updated last month
Alternatives and similar repositories for cellsweep
Users that are interested in cellsweep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆29Apr 13, 2026Updated 3 months ago
- ☆31May 19, 2026Updated 2 months ago
- ☆19Jun 3, 2026Updated last month
- Flexible, scalable, QTL analyses using generalized linear models implemented in JAX☆18Jun 24, 2026Updated 3 weeks ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆88Jun 17, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆32Jun 21, 2026Updated last month
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 7 months ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆29May 4, 2026Updated 2 months ago
- ☆68Apr 22, 2026Updated 2 months ago
- ☆12Aug 30, 2024Updated last year
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- Pipeline to run scE2G☆44Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆25Updated this week
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Jul 14, 2026Updated last week
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆17Feb 3, 2026Updated 5 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- A computational framework☆18Jun 1, 2026Updated last month
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆45Apr 15, 2026Updated 3 months ago
- Python bindings for SingleR☆16May 6, 2026Updated 2 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆37Jun 15, 2026Updated last month
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- ☆20Nov 12, 2025Updated 8 months ago
- ☆19May 25, 2026Updated last month
- AnnData interoperability in R☆192Updated this week
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- ☆14Apr 20, 2023Updated 3 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated 11 months ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Jul 14, 2026Updated last week
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆25May 23, 2026Updated last month
- ☆14Jun 10, 2025Updated last year