Local alignment search with k-bounded matching statistics.
☆24Sep 16, 2026Updated 3 weeks ago
Alternatives and similar repositories for kbo
Users that are interested in kbo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated 2 months ago
- An extensible and performant aligner and read mapper☆107Sep 15, 2026Updated 3 weeks ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- ☆20Nov 17, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆30Jul 26, 2026Updated 2 months ago
- Fast sequence distance estimates☆34Updated this week
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- Just another minhash implementation.☆13Sep 14, 2026Updated 3 weeks ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 3 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Sep 16, 2026Updated 3 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- ☆18Jan 29, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆48Updated this week
- Split k-mer analysis – version 2☆106Updated this week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- ☆22Jul 28, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comprehensive prokaryotic genome annotation pipeline☆92Sep 4, 2026Updated last month
- ☆38Jan 12, 2026Updated 8 months ago
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 9 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆51Sep 25, 2026Updated last week
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Sep 18, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for generating consensus long-read assemblies for bacterial genomes☆240Oct 2, 2026Updated last week
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Bitpacked sequence trait and implementation☆19Updated this week
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- Fast approximate string searching☆169Sep 27, 2026Updated last week
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 5 months ago
- Ultrafast identification of signature sequences in microbial genomes☆21Updated this week