Local alignment search with k-bounded matching statistics.
☆24Aug 19, 2025Updated 11 months ago
Alternatives and similar repositories for kbo
Users that are interested in kbo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- An extensible and performant aligner and read mapper☆98Updated this week
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- ☆20Nov 17, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆28Jun 20, 2026Updated last month
- Fast sequence distance estimates☆30Jul 1, 2026Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Just another minhash implementation.☆12May 28, 2026Updated last month
- Plasmid analysis using rearrangement distances☆56Updated this week
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆14Apr 28, 2026Updated 2 months ago
- ☆20Jan 13, 2026Updated 6 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- ☆18Jan 29, 2025Updated last year
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last week
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- ☆22Jul 28, 2022Updated 3 years ago
- A comprehensive prokaryotic genome annotation pipeline☆90Jul 13, 2026Updated last week
- ☆38Jan 12, 2026Updated 6 months ago
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 5 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Enumerating bubbles in pangenome graphs☆15Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 9 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Updated this week
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last week
- Fast approximate string searching☆158Jul 13, 2026Updated last week
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 2 months ago