waldronlab / cBioPortalDataLinks
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
☆33Updated 3 months ago
Alternatives and similar repositories for cBioPortalData
Users that are interested in cBioPortalData are comparing it to the libraries listed below
Sorting:
- Template for building a bioconductor workshop package using github actions☆21Updated 4 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 3 months ago
- The blog of tidyomics☆14Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Bioconductor package for management of multi-assay data☆72Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Glimma R package☆50Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 10 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 5 months ago
- This is the ensembldb development repository.☆35Updated 2 months ago
- Introduction to the Bioconductor project☆18Updated last week
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆29Updated 2 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- A container (S4 class) for matrix-like assays☆36Updated last month
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- R interface to genome annotation files and the UCSC genome browser☆35Updated 3 weeks ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆25Updated last week
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated last month
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 weeks ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago