Alternatives and similar repositories for cBioPortalData

Users that are interested in cBioPortalData are comparing it to the libraries listed below

• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 6 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 5 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆78Updated last month
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆41Updated last year
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 7 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 2 months ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆47Updated 4 months ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 8 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated 3 months ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆19Updated 3 months ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆25Updated 3 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆73Updated 2 months ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆37Updated 2 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last month
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last month
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated 2 years ago
• vjcitn / BiocOncoTK
  Bioconductor components for general cancer genomics
  ☆11Updated 3 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated last year
• genesofeve / projectR
  ☆63Updated 10 months ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆26Updated 7 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆30Updated 3 months ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆27Updated this week