waldronlab / cBioPortalDataLinks
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
☆33Updated last month
Alternatives and similar repositories for cBioPortalData
Users that are interested in cBioPortalData are comparing it to the libraries listed below
Sorting:
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Introduction to the Bioconductor project☆18Updated this week
- Identify and correct invalid gene symbols☆58Updated 7 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated this week
- Representation and manipulation of genomic intervals☆46Updated this week
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Create QC and summary reports for Alevin output☆32Updated 2 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 8 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Template for building a bioconductor workshop package using github actions☆20Updated 11 months ago
- Visualize Cytometry data with ggplot2☆59Updated last year
- DESeq2 or edgeR☆22Updated 8 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Glimma R package☆50Updated 9 months ago
- Cancer Dependency Map package☆30Updated 10 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Bioconductor package for management of multi-assay data☆72Updated last month
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last year
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated 2 years ago
- DEAPP shiny App☆30Updated 3 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 7 months ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 7 months ago