waldronlab / cBioPortalData
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
☆33Updated last week
Alternatives and similar repositories for cBioPortalData:
Users that are interested in cBioPortalData are comparing it to the libraries listed below
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- This is the ensembldb development repository.☆34Updated 6 months ago
- Introduction to the Bioconductor project☆18Updated this week
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Cancer Dependency Map package☆27Updated 6 months ago
- Glimma R package☆50Updated 5 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- Reactome Pathway Analysis☆40Updated 3 months ago
- Bioconductor package that makes BIG data pint-sized.☆20Updated last year
- Course material for introductory R / Bioconductor courses☆44Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 months ago
- MSigDB gene sets for multiple organisms in a tidy data format☆72Updated this week
- DESeq2 or edgeR☆22Updated 8 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 3 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 5 years ago
- Bioconductor package for management of multi-assay data☆71Updated last week
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆24Updated 4 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- ☆62Updated 3 months ago
- Template for building a bioconductor workshop package using github actions☆20Updated 7 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 2 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated last year