Alternatives and similar repositories for cBioPortalData

Users that are interested in cBioPortalData are comparing it to the libraries listed below

• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 3 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated 2 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 weeks ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 2 months ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆18Updated last week
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆40Updated last year
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated last month
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆30Updated 5 months ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆28Updated last month
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 9 months ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated last month
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆30Updated last year
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆38Updated 4 years ago
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 2 months ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆60Updated 3 weeks ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated last week
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 9 years ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆79Updated this week
• genesofeve / projectR
  ☆63Updated 6 months ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆43Updated 5 months ago