Alternatives and similar repositories for cBioPortalData

Users that are interested in cBioPortalData are comparing it to the libraries listed below

• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 5 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 6 months ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆23Updated 3 years ago
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 6 months ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 2 months ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆19Updated 3 months ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆74Updated 2 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆45Updated last month
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆25Updated 7 years ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆43Updated 3 weeks ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated last month
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 5 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated last year
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆27Updated 3 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last month
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 6 years ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated 2 months ago
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆26Updated last week