Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
☆37May 14, 2026Updated 4 months ago
Alternatives and similar repositories for cBioPortalData
Users that are interested in cBioPortalData are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Mar 15, 2023Updated 3 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Sep 17, 2026Updated 3 weeks ago
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 4 months ago
- Schema.org Data Models for HTAN☆15Sep 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- countsimQC - Compare characteristic features of count data sets☆31Apr 28, 2026Updated 5 months ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- ☆14Sep 18, 2018Updated 8 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆19Sep 30, 2026Updated last week
- Cancer Dependency Map package☆33Aug 16, 2024Updated 2 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Mar 15, 2023Updated 3 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- Template for building a bioconductor workshop package using github actions☆23Aug 5, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆28Jul 18, 2024Updated 2 years ago
- Repository for custom module scripts for SMIDA☆14May 19, 2025Updated last year
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated last year
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Package for biomedical data model and metadata ingress management☆28Apr 4, 2026Updated 6 months ago
- A hacky little interface to call the Enrichr functional enrichment tool from R.☆13Dec 13, 2018Updated 7 years ago
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆26Updated this week
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 10 months ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import☆31Apr 28, 2026Updated 5 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- ARCHIVED R client for the cranchecks.info API☆15Sep 9, 2022Updated 4 years ago
- Annotation of Genetic Variants☆32Jul 28, 2026Updated 2 months ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- Bioconductor package for management of multi-assay data☆76Aug 28, 2026Updated last month
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆46Jun 25, 2026Updated 3 months ago
- Backend server for Genome Nexus☆46Sep 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Provides classes for working with sets☆11Dec 19, 2025Updated 9 months ago
- Rust wrapper for STAR aligner☆23Apr 13, 2026Updated 5 months ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆27Apr 13, 2025Updated last year
- Code for performing PCA followed by CCA☆19Dec 2, 2018Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 8 years ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Jun 4, 2026Updated 4 months ago
- ☆32Aug 25, 2026Updated last month