aritra90 / TeraPCA
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
☆15Updated 2 years ago
Alternatives and similar repositories for TeraPCA:
Users that are interested in TeraPCA are comparing it to the libraries listed below
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- This BLENDER has been sunsetted☆16Updated 7 months ago
- Universal RObust Peak Annotator☆16Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated this week
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 2 weeks ago
- Annotating principal splice isoforms☆14Updated 7 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- ☆11Updated 7 years ago
- ☆12Updated last year
- ☆28Updated 6 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆23Updated 7 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆10Updated last month
- Genetics training camp☆21Updated 4 years ago