aritra90 / TeraPCALinks
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
☆15Updated 3 years ago
Alternatives and similar repositories for TeraPCA
Users that are interested in TeraPCA are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- ☆12Updated last year
- ☆11Updated 8 years ago
- ☆15Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 months ago
- ☆12Updated 6 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆14Updated this week
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆32Updated 6 years ago
- Python module to analyse CRISPR-based libraries☆13Updated 4 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- ☆21Updated 9 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 9 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- ☆14Updated 5 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- UChicago BSD Quantitative Bootcamp 2020☆11Updated 3 years ago