Alternatives and similar repositories for genemunge:

Users that are interested in genemunge are comparing it to the libraries listed below

• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆52Updated 6 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆56Updated 6 months ago
• hiranumn / DeepATACseq
  Repository for the code for DeepATAC project presented at WCB workshop in ICML2017
  ☆22Updated 7 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• gwh120104 / deepmetabolism
  DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing
  ☆31Updated 7 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated 2 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆23Updated 2 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• ramzan1990 / sequence2vec
  ☆21Updated 8 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 3 years ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 7 years ago
• harvardnlp / regulatory-prediction
  Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…
  ☆29Updated 7 years ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 6 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆18Updated last week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 8 months ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• jaxcs / Seqnature
  Seqnature: incorporate SNPs and Indels into a reference genome
  ☆16Updated 8 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 2 weeks ago
• uci-cbcl / DeepCons
  Understanding sequence conservation with deep learning
  ☆20Updated 8 years ago
• olgabot / kvector
  kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
  ☆10Updated 7 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated last year
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago