unlearnai / genemunge
Tools for munging genomic data
☆21Updated 5 years ago
Alternatives and similar repositories for genemunge:
Users that are interested in genemunge are comparing it to the libraries listed below
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Align sequences and then parse features.☆18Updated last month
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 7 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆34Updated last year
- ☆21Updated 8 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 7 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 7 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Computational biology utility scripts☆19Updated 2 weeks ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 8 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- ☆11Updated 7 years ago
- ☆28Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆65Updated last month