Tools for munging genomic data
☆21Jul 9, 2019Updated 6 years ago
Alternatives and similar repositories for genemunge
Users that are interested in genemunge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆15Mar 27, 2026Updated 3 weeks ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 4 months ago
- Kipoi's model zoo API☆242Dec 17, 2025Updated 4 months ago
- Probabilistic Classifier Chains (PCC) algorithm solving the problem of Multi-Label Classification. For more information see: Krzysztof De…☆15Jun 25, 2018Updated 7 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆33Aug 4, 2022Updated 3 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Oct 26, 2025Updated 5 months ago
- ☆10Sep 27, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Find and characterise transposable element insertions☆20May 26, 2023Updated 2 years ago
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 3 years ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18May 8, 2017Updated 8 years ago
- Flexible guide to performing code review☆10Jul 17, 2017Updated 8 years ago
- Beacon v2 Reference Implementation (API)☆18Dec 13, 2024Updated last year
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Efficiently read and write sequencing data from Python☆70Oct 12, 2025Updated 6 months ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A library for compressing, encrypting, and querying alignment data.☆15Jul 6, 2016Updated 9 years ago
- ☆16May 23, 2022Updated 3 years ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- The Dazzler Data Base☆36Feb 17, 2025Updated last year
- This repository contains reference data from the Richardson Lab at Duke.☆15Jul 26, 2023Updated 2 years ago
- Neural networks for amino acid sequences☆22Feb 26, 2018Updated 8 years ago
- Jupyter notebooks showing to implement statistical functions.☆14Jun 14, 2020Updated 5 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 7 months ago
- Conformal Prediction library for Orange3☆10May 24, 2019Updated 6 years ago
- Automatically build wheels for packages released on PyPI☆15Nov 25, 2019Updated 6 years ago
- Pharmacophore tool based on OpenEye toolkits☆10Feb 22, 2016Updated 10 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- SIMD optimised algorithms and data types☆18Oct 1, 2019Updated 6 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago