gogetdata / ggd-recipes
conda recipes for genomic data
☆85Updated 3 years ago
Alternatives and similar repositories for ggd-recipes:
Users that are interested in ggd-recipes are comparing it to the libraries listed below
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated this week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Fast fusion detection using kallisto☆80Updated 5 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 9 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- BigWig and BAM utilities☆95Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated this week
- Tools for bam file processing☆55Updated 9 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last week
- 10x Genomics Reads Simulator☆45Updated last year