Secure and federated genome-wide association studies
☆17Mar 19, 2025Updated 11 months ago
Alternatives and similar repositories for sfgwas
Users that are interested in sfgwas are comparing it to the libraries listed below
Sorting:
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 2 weeks ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- ☆12Jun 7, 2024Updated last year
- ☆11Dec 8, 2022Updated 3 years ago
- ☆12Sep 27, 2023Updated 2 years ago
- ☆14Oct 17, 2024Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- ☆21Feb 16, 2026Updated 2 weeks ago
- ☆16Sep 14, 2023Updated 2 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- From QC to summary statistics☆17Jun 27, 2020Updated 5 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow☆18Jan 22, 2020Updated 6 years ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Sep 24, 2023Updated 2 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 7 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 6 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Nov 3, 2025Updated 4 months ago
- Improving gene isoform quantification with miniQuant☆35Jan 13, 2026Updated last month
- GWAS genetics Fine-mapping method☆26Oct 16, 2024Updated last year
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Feb 26, 2026Updated last week
- Variant catalogue pipeline☆26Jan 30, 2026Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆25Feb 28, 2026Updated last week
- Reproducibility notebooks for scPoli☆23May 5, 2023Updated 2 years ago
- Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.☆38Feb 9, 2026Updated 3 weeks ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆26Aug 3, 2021Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 10 months ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 10 months ago
- Overview of GDC Harmonization Workflows☆36May 16, 2023Updated 2 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆32Jun 20, 2025Updated 8 months ago
- ☆29Sep 23, 2019Updated 6 years ago