PavlidisLab / Gemma
Genomics data re-analysis
☆23Updated this week
Alternatives and similar repositories for Gemma:
Users that are interested in Gemma are comparing it to the libraries listed below
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Updated 11 months ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Updated 5 years ago
- ☆17Updated 3 months ago
- REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability☆13Updated last year
- Template for building a bioconductor workshop package using github actions☆20Updated 8 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 3 months ago
- Proteomics Toolset for Integrative Data Analysis☆22Updated last year
- Statistical power studies for multi-omics experiments.☆31Updated 2 months ago
- Cancer Dependency Map package☆29Updated 7 months ago
- Quick access to gene synonyms☆27Updated this week
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last week
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- Single sample network reconstruction in R☆22Updated 4 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆22Updated 4 months ago
- Differential Correlation across Ranked Samples☆12Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 2 months ago
- Source code of the R packge BgeeDB to use data from the Bgee database☆16Updated 2 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 3 weeks ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆18Updated 7 months ago
- Explore the cancer relevance of your gene list☆51Updated last month
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆77Updated 2 weeks ago
- Creating package to draw proteins from Uniprot API☆34Updated last year
- ☆15Updated 4 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated 2 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated 2 months ago
- Toolbox package for organizing and working with TCGA data☆27Updated 3 months ago
- Documentation for the cellxgene product☆16Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year