Alternatives and similar repositories for Gemma

Users that are interested in Gemma are comparing it to the libraries listed below

• lgatto / rols
  An R package to query EBI's Ontology Lookup Service (OLS)
  ☆11Updated last month
• hb-gitified / cellrangerRkit
  Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
  ☆19Updated 6 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 4 months ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last month
• stephaniehicks / bioconductorNotes
  My notes/usage examples for various Bioconductor packages
  ☆15Updated 9 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆81Updated 2 weeks ago
• Sage-Bionetworks / synapser
  An R package providing programmatic access to Synapse
  ☆37Updated this week
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• ZAEDPolSl / MrGSEA
  MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…
  ☆10Updated 3 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆35Updated last year
• girke-lab / drugbankR
  R package for querying the DrugBank database in batch locally
  ☆37Updated 4 years ago
• leekgroup / recount-website
  Code for the Recount project
  ☆11Updated last year
• dzhang32 / dasper
  Detecting Aberrant Splicing Events from RNA-sequencing data
  ☆16Updated last year
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 5 months ago
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆16Updated 4 months ago
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆35Updated last month
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆18Updated 2 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 3 weeks ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆33Updated last year
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 3 years ago
• CRI-iAtlas / shiny-iatlas
  An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
  ☆49Updated 4 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆73Updated 2 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆70Updated 2 weeks ago
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• maggiecrow / DEprior
  ☆15Updated 5 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆37Updated 3 months ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆69Updated 3 months ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 7 months ago