sc932 / ALE
Assembly Likelihood Estimator
☆32Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ALE
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated 11 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 6 months ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- genomic alignment similarity search tool☆19Updated 5 months ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- MIRA sequence assembler☆27Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆39Updated last year
- ☆26Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Find Unique genomic Regions☆29Updated last week
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 7 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last week
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Remove lambda phage reads from a fastq file☆28Updated last year
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- ☆26Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago