Assembly Likelihood Estimator
☆35Mar 18, 2023Updated 3 years ago
Alternatives and similar repositories for ALE
Users that are interested in ALE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 8 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆26Jan 30, 2026Updated last month
- ☆49Mar 19, 2023Updated 3 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last month
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 3 years ago
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 2 weeks ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Plasmid analysis using rearrangement distances☆50Mar 12, 2026Updated last week
- ☆13Nov 15, 2017Updated 8 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆51Aug 9, 2021Updated 4 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated last month
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 2 weeks ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 3 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- ☆30Sep 21, 2023Updated 2 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago