Bioconductor / CSAMA2015
Course material for CSAMA 2015: Statistics and Computing in Genome Data Science
☆11Updated 2 years ago
Alternatives and similar repositories for CSAMA2015:
Users that are interested in CSAMA2015 are comparing it to the libraries listed below
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 5 months ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- Explore design matrices interactively with R/Shiny☆37Updated 3 weeks ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated this week
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 4 months ago
- Template for building a bioconductor workshop package using github actions☆20Updated 10 months ago
- Glimma R package☆50Updated 8 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated 2 weeks ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 4 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last week
- ☆11Updated 4 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- Bioconductor package for management of multi-assay data☆72Updated this week
- This python package is for transitioning bioconductor from SVN to git☆14Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 5 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Independent Hypothesis Weighting☆15Updated last year
- Functional enrichment analysis of high-throughput omics data☆20Updated 4 months ago