Bioconductor / CSAMA2015
Course material for CSAMA 2015: Statistics and Computing in Genome Data Science
☆11Updated last year
Related projects: ⓘ
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆41Updated 8 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 9 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated last year
- Template for building a bioconductor workshop package using github actions☆19Updated 2 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 4 months ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 4 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last week
- This python package is for transitioning bioconductor from SVN to git☆14Updated last year
- Independent Hypothesis Weighting☆15Updated 11 months ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- Glimma R package☆50Updated 2 weeks ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆19Updated 2 weeks ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- Compilation of R heatmap functions.☆13Updated 2 years ago
- ☆11Updated 4 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated 3 weeks ago
- Demonstration of the use of an R package to organize a data analysis project☆21Updated 4 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆19Updated 4 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- R package for benchmarking single cell analysis methods☆29Updated 11 months ago
- A tidy interface for coverage analysis☆24Updated 4 years ago