Bioconductor / CSAMA2015
Course material for CSAMA 2015: Statistics and Computing in Genome Data Science
☆11Updated last year
Alternatives and similar repositories for CSAMA2015:
Users that are interested in CSAMA2015 are comparing it to the libraries listed below
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆43Updated 3 months ago
- Explore design matrices interactively with R/Shiny☆37Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Template for building a bioconductor workshop package using github actions☆20Updated 7 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- Bioconductor package that makes BIG data pint-sized.☆20Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆42Updated 2 months ago
- TOP results by CONfident efFECT Sizes.☆14Updated 2 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 2 months ago
- Glimma R package☆50Updated 5 months ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 2 months ago
- ☆11Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 4 months ago
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- Bioconductor package for management of multi-assay data☆71Updated last week
- BioC2020: Where Software and Biology Connect☆12Updated last year
- Genomic plot in trellis layout☆39Updated 11 months ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆37Updated 3 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago