quadram-institute-bioscience / socruLinks
Order and orientation of complete bacterial genomes
☆29Updated 5 months ago
Alternatives and similar repositories for socru
Users that are interested in socru are comparing it to the libraries listed below
Sorting:
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Recombination-free trees☆64Updated 4 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated last week
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 3 weeks ago
- Plasmid exploration of bacterial genomes☆23Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Split Kmer Analysis☆66Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago