Order and orientation of complete bacterial genomes
☆29Jul 11, 2025Updated 11 months ago
Alternatives and similar repositories for socru
Users that are interested in socru are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated last month
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 3 months ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆14Jun 11, 2026Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Jun 9, 2026Updated last week
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 10 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated last month
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 3 months ago
- ☆11Sep 16, 2020Updated 5 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Apr 10, 2026Updated 2 months ago
- Organism-specific interpretation of AMR genotypes☆19Mar 17, 2026Updated 3 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆24Feb 26, 2026Updated 3 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆111Oct 20, 2023Updated 2 years ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- ☆10Apr 16, 2025Updated last year
- IS mapping software☆58Dec 3, 2021Updated 4 years ago
- ☆19Nov 11, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 7 months ago
- zDB: comparative bacterial genomics made easy☆41May 6, 2026Updated last month
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated last month
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago