Standard reaction Gibbs energy estimation for biochemical reactions
☆19Dec 10, 2018Updated 7 years ago
Alternatives and similar repositories for component-contribution
Users that are interested in component-contribution are comparing it to the libraries listed below
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆49Updated this week
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆67Jan 6, 2026Updated 2 months ago
- cameo - computer aided metabolic engineering & optimization☆123Nov 7, 2022Updated 3 years ago
- ☆23Aug 28, 2020Updated 5 years ago
- ☆13Jul 25, 2017Updated 8 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jul 29, 2025Updated 7 months ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Analysis of ensembles of metabolic network reconstructions☆21Feb 9, 2026Updated last month
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …☆12Sep 28, 2021Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Mar 14, 2026Updated last week
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12Oct 26, 2025Updated 4 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 2 years ago
- MGnify RESTful API☆10Feb 11, 2026Updated last month
- An amino acid sequence annotator☆17May 15, 2025Updated 10 months ago
- Microbiome Informatics - API and service usage examples☆14Oct 7, 2021Updated 4 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 5 years ago
- The powerful crossword generator for Windows☆16Jan 31, 2026Updated last month
- Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"☆13Aug 7, 2023Updated 2 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated last year
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- Contains three partitioning methods used to partition water vapor and carbon dioxide fluxes☆10Nov 20, 2024Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Jan 11, 2019Updated 7 years ago
- ☆16Sep 8, 2021Updated 4 years ago
- Graph Neural Network model for survival analysis from multi-omics data☆14Mar 9, 2022Updated 4 years ago
- Visualization exploring Nobel Prize Laureates throughout time and across each category.☆11Jul 16, 2022Updated 3 years ago
- ☆10Jun 8, 2018Updated 7 years ago
- Draw RNA secondary structures☆10Aug 20, 2021Updated 4 years ago
- Glue between Clinical Genomics apps☆11Updated this week
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compo…☆51Apr 20, 2022Updated 3 years ago
- A modern multiple sequence alignment browser - built for the terminal.☆60Updated this week
- Build, share, and embed visualizations of metabolic pathways.☆233Aug 15, 2024Updated last year