Alternatives and similar repositories for component-contribution

Users that are interested in component-contribution are comparing it to the libraries listed below

• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated last month
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆42Updated 5 months ago
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated last week
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆49Updated 5 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆15Updated 2 weeks ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• DD-DeCaF / tutorials
  Teaching materials for cobrapy, cameo, escher and DD-DeCaF
  ☆25Updated 3 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated last month
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆29Updated 2 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• latendre / PythonCyc
  ☆23Updated 5 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆128Updated last week
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated last year
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆30Updated 3 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆35Updated 2 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• SBRG / MASSpy
  ☆26Updated 3 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆33Updated last week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆73Updated last year
• encore-similarity / encore
  An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…
  ☆16Updated 7 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated last week
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆58Updated 8 months ago