eladnoor / component-contribution

Related projects ⓘ

Alternatives and complementary repositories for component-contribution

• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆13Updated 3 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆38Updated last month
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 8 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆39Updated last month
• latendre / PythonCyc
  ☆22Updated 4 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆34Updated 5 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆26Updated last year
• matthiaskoenig / brendapy
  BRENDA parser in python
  ☆20Updated 2 years ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆19Updated 2 weeks ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆16Updated 6 years ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆26Updated 2 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆46Updated last month
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆41Updated 4 years ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆18Updated 2 weeks ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• JBEI / jqmm
  JBEI Quantitative Metabolic Modeling library
  ☆12Updated 4 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 2 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆51Updated last year
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆15Updated 8 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆34Updated last year
• SBRG / bigg_models
  The BiGG Models website server
  ☆80Updated 5 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• Edinburgh-Genome-Foundry / SnapGeneReader
  👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
  ☆18Updated 3 months ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 5 years ago
• DD-DeCaF / tutorials
  Teaching materials for cobrapy, cameo, escher and DD-DeCaF
  ☆22Updated 2 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆11Updated last year
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆67Updated last month