Alternatives and similar repositories for KM_prediction_function

Users that are interested in KM_prediction_function are comparing it to the libraries listed below

• AlexanderKroll / KM_prediction
  ☆38Updated 3 years ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆106Updated last year
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆82Updated 5 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 6 months ago
• Luo-SynBioLab / UniKP
  ☆81Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆154Updated 3 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆90Updated 2 months ago
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆204Updated last week
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆169Updated 2 years ago
• Robaina / BRENDApyrser
  A Python parser for the BRENDA database
  ☆32Updated last year
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated last year
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆174Updated last week
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆56Updated 4 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆68Updated 4 months ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆106Updated 11 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆108Updated last year
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆52Updated 4 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆115Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆155Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆128Updated 3 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆109Updated last year
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 2 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆99Updated 2 weeks ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆65Updated this week
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆111Updated 2 years ago
• AlexanderKroll / ESP
  ☆73Updated 10 months ago
• maranasgroup / dGPredictor
  ☆10Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆51Updated 3 weeks ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆64Updated 4 months ago