JBEI / KineticLearning
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
☆28Updated 2 years ago
Alternatives and similar repositories for KineticLearning:
Users that are interested in KineticLearning are comparing it to the libraries listed below
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ☆22Updated 2 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 5 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated this week
- A python toolbox for 13C metabolic flux analysis☆19Updated 5 months ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆69Updated 4 months ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 6 months ago
- BRENDA parser in python☆21Updated 2 years ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- Metabolic Engineering Workbench☆38Updated 8 months ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆56Updated last week
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- Symbolic Kinetic Models with Python☆30Updated this week
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆19Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 6 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- Enumerating biosynthetic pathways in metabolic networks☆12Updated 2 weeks ago
- ☆22Updated 4 years ago
- Evolutionary velocity with protein language models☆84Updated last year
- A high-fidelity E. coli RNA-seq compendium☆33Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago