JBEI / KineticLearningLinks
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
☆30Updated 3 years ago
Alternatives and similar repositories for KineticLearning
Users that are interested in KineticLearning are comparing it to the libraries listed below
Sorting:
- ☆25Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- Release of the whole cell E. coli model.☆71Updated 10 months ago
- Symbolic Kinetic Models with Python☆32Updated 4 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- Comprehensive Python client for the Uniprot REST API☆52Updated 3 weeks ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated 2 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆59Updated last month
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Updated 8 years ago
- Metabolic Engineering Workbench☆40Updated last year
- BRENDA parser in python☆22Updated 3 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 10 years ago
- ☆29Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆58Updated last week