JBEI / KineticLearning
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
☆28Updated 2 years ago
Alternatives and similar repositories for KineticLearning:
Users that are interested in KineticLearning are comparing it to the libraries listed below
- A python toolbox for 13C metabolic flux analysis☆20Updated 6 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated 6 months ago
- Evolutionary velocity with protein language models☆88Updated last year
- ☆22Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆56Updated 3 weeks ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated last week
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- BRENDA parser in python☆21Updated 2 years ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- Draw RNA secondary structures in python.☆47Updated 6 months ago
- An introductory workshop to protein language models☆13Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 4 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 7 months ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- Models, design algorithms, and other software related to Salis lab publications☆28Updated 4 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆21Updated last month
- Comprehensive Python client for the Uniprot REST API☆46Updated 6 months ago
- Python package and command line tool for epitope prediction☆51Updated 7 months ago