Efficient random sampling for COBRA models
☆14Oct 14, 2021Updated 4 years ago
Alternatives and similar repositories for gapsplit
Users that are interested in gapsplit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reaction Inclusion by Parsimony and Transcript Distribution☆13Feb 14, 2023Updated 3 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- ☆10Jul 4, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated last year
- A container for all enzyme constrained models created by GECKO.☆17Jul 4, 2022Updated 3 years ago
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated 2 months ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Mar 6, 2025Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 3 weeks ago
- ☆27Dec 20, 2023Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆90May 29, 2026Updated last week
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The generic genome-scale metabolic model of Homo sapiens☆162Mar 30, 2026Updated 2 months ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- REconstruction of dyNAmIc models through Stratified Sampling using Artificial Neural networks and Concepts of Evolution strategies☆19Feb 13, 2026Updated 3 months ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- Accompanying code for AAAI 2021 publication - High-Dimensional Bayesian Optimization via Tree-Structured Additive Models☆11Jun 19, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Beiwe is a smartphone-based digital phenotyping research platform. This repository contains some data analysis code.☆14Feb 10, 2020Updated 6 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- an initiative to provide infrastructure for reproducible workflows around open data☆29Jun 1, 2022Updated 4 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 7 years ago
- collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)☆23Mar 29, 2021Updated 5 years ago
- Practice Multi-Platform Microarray Tutorial☆17Apr 13, 2016Updated 10 years ago
- ☆11Jul 6, 2023Updated 2 years ago
- Symbolic Kinetic Models with Python☆37Jun 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to Import and Modify SVG (XML) Graphic Files☆27Nov 1, 2024Updated last year
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 4 years ago
- Python implementation of the BRIM algorithm for bipartite community structure detection.☆12Aug 11, 2022Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆17Jan 21, 2022Updated 4 years ago
- 🏡 My homepage, built on Nuxt.js☆10Oct 31, 2024Updated last year
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- Analysis of Microbial Growth Assays☆17Mar 12, 2025Updated last year