jensenlab / gapsplitLinks
Efficient random sampling for COBRA models
☆14Updated 4 years ago
Alternatives and similar repositories for gapsplit
Users that are interested in gapsplit are comparing it to the libraries listed below
Sorting:
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- A python toolbox for 13C metabolic flux analysis☆23Updated 4 months ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated 2 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆121Updated 3 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 8 months ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆269Updated this week
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 4 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆41Updated 4 months ago
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- memote – the genome-scale metabolic model test suite☆143Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated 3 weeks ago
- The consensus GEM for Saccharomyces cerevisiae☆113Updated last week
- The BiGG Models website server☆85Updated 6 years ago
- Python framework for Systems Biology modeling☆188Updated 3 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆118Updated 3 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- D3.js based visualizations of cobrapy metabolic models☆48Updated 5 years ago
- framed: a metabolic modeling package for python☆26Updated 6 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆153Updated last week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆287Updated 5 months ago
- Reconstruction algorithms for Python☆26Updated last year
- A Python framework for structural systems biology☆109Updated 4 years ago
- nucleic acid folding☆108Updated 3 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 8 months ago
- Release of the whole cell E. coli model.☆72Updated 11 months ago
- Unified biological sequence manipulation in Python☆207Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week