Reaction Inclusion by Parsimony and Transcript Distribution
☆12Feb 14, 2023Updated 3 years ago
Alternatives and similar repositories for riptide
Users that are interested in riptide are comparing it to the libraries listed below
Sorting:
- Efficient random sampling for COBRA models☆14Oct 14, 2021Updated 4 years ago
- A container for all enzyme constrained models created by GECKO.☆16Jul 4, 2022Updated 3 years ago
- ☆10Jul 4, 2019Updated 6 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Feb 27, 2026Updated last week
- Analysis of ensembles of metabolic network reconstructions☆21Feb 9, 2026Updated 3 weeks ago
- Toolbox for including enzyme constraints on a genome-scale model.☆81Feb 22, 2026Updated last week
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Representation of Module Activity☆10May 31, 2017Updated 8 years ago
- ☆13Jun 5, 2024Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆43Jul 9, 2025Updated 7 months ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- ☆11Apr 25, 2019Updated 6 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- ☆10Sep 11, 2020Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- ☆10Jun 9, 2025Updated 8 months ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 7 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆11Dec 16, 2024Updated last year
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 5 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆14Jun 1, 2020Updated 5 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- ☆15Nov 21, 2025Updated 3 months ago
- Provides easy access to Thermo Discoverer platform results☆18Dec 1, 2025Updated 3 months ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago
- Fused lasso for high-dimensional regression over groups☆10Jun 17, 2018Updated 7 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆18Mar 18, 2025Updated 11 months ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- ☆12Dec 10, 2024Updated last year
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago