A utility framework for the management of genome-scale metabolic models.
☆11Mar 28, 2020Updated 5 years ago
Alternatives and similar repositories for gsmodutils
Users that are interested in gsmodutils are comparing it to the libraries listed below
Sorting:
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Mar 5, 2019Updated 6 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Jul 8, 2025Updated 7 months ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Jul 9, 2025Updated 7 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Repository of tutorials for The COBRA Toolbox☆24Feb 6, 2026Updated 3 weeks ago
- Analysis of ensembles of metabolic network reconstructions☆21Feb 9, 2026Updated 2 weeks ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- ☆10Aug 19, 2024Updated last year
- A Python interface for NIH Reporter APIs☆11Feb 4, 2025Updated last year
- R library for visualizing (social science) sequence data using ggplot2☆16Nov 16, 2025Updated 3 months ago
- memote – the genome-scale metabolic model test suite☆145Aug 14, 2025Updated 6 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- Compare 2 basketball players by reading/comparing NBA stats in an Excel sheet.☆11Aug 19, 2018Updated 7 years ago
- An R package for interfacing with a WebAPI instance☆10Sep 5, 2025Updated 5 months ago
- Intro to R for Datascience workshop content☆16Mar 24, 2022Updated 3 years ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 7 years ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆43Jul 9, 2025Updated 7 months ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- Predict All Links In Ecological Networks☆13Dec 9, 2021Updated 4 years ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 7 years ago
- Shiny based data explorer with report templates based on field selection☆11Oct 27, 2015Updated 10 years ago
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- Analyzing NBA Data☆11Feb 19, 2015Updated 11 years ago
- A basic science lab framework aimed at reproducibility and lab management.☆13Dec 3, 2025Updated 2 months ago
- Facial Recognition Software for Macaque Monkeys☆13Jul 18, 2017Updated 8 years ago
- R package for building flexible workflows☆13Oct 16, 2019Updated 6 years ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- A project to develop the R Shiny applications.☆12May 13, 2019Updated 6 years ago
- Create accessible components in shinyapps (in progress 🏗)☆11Oct 17, 2023Updated 2 years ago
- Like cookiecutter_pypackage, but for just a module.☆14Jul 27, 2016Updated 9 years ago
- This repository contains the data and code created under the project NLP4Rare-cm-uc3m.☆10Sep 14, 2021Updated 4 years ago
- Annotating epigenetic variation among samples with region sets in R☆11Jan 18, 2025Updated last year
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- A Small Collection of Syllable Counting Functions☆11Feb 17, 2019Updated 7 years ago