A utility framework for the management of genome-scale metabolic models.
☆11Mar 28, 2020Updated 6 years ago
Alternatives and similar repositories for gsmodutils
Users that are interested in gsmodutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆30Mar 5, 2019Updated 7 years ago
- An R package for interfacing with a WebAPI instance☆10Sep 5, 2025Updated 7 months ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Mar 4, 2026Updated last month
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Jul 8, 2025Updated 9 months ago
- Analysis of ensembles of metabolic network reconstructions☆21Feb 9, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- Repository of tutorials for The COBRA Toolbox☆25Mar 16, 2026Updated 3 weeks ago
- Cohort definition Application Programming in R☆21Mar 26, 2026Updated 2 weeks ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- A lightweight App that provides all Github Workflows of a Repository in CCTray Specification.☆11Sep 27, 2024Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- ☆14Mar 6, 2025Updated last year
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 7 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Generate markdown tables from JSON data at the command line.☆22Updated this week
- A simple CLI to obtain a GitHub App Installation Access Token☆19Mar 26, 2022Updated 4 years ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- ☆14Feb 4, 2026Updated 2 months ago
- Repository of technology how-to’s and instructional content for Researchers☆12Feb 27, 2024Updated 2 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 5 years ago
- Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.☆28Mar 31, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 3 months ago
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆13Apr 3, 2026Updated last week
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 3 months ago
- cameo - computer aided metabolic engineering & optimization☆123Nov 7, 2022Updated 3 years ago
- An awesome Python SDK for interfacing with the 2600hz APIs, written by Alex Good☆10Feb 28, 2020Updated 6 years ago
- Tool for reliability assessment of omics peprocessing☆11Jan 13, 2026Updated 2 months ago
- ☆16Jun 18, 2020Updated 5 years ago
- Predict All Links In Ecological Networks☆13Dec 9, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 6 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Python Environment for Modeling and Simulating Biological Systems☆136Dec 5, 2025Updated 4 months ago
- The Stable Matching or the Stable Marriage algorithm is a mathematical algorithm that finds stable matches between two equally sized sets…☆15Jul 21, 2020Updated 5 years ago
- The powerful crossword generator for Windows☆16Jan 31, 2026Updated 2 months ago
- Celery worker for R tasks! Celery R☆29May 6, 2021Updated 4 years ago