A utility framework for the management of genome-scale metabolic models.
☆11Mar 28, 2020Updated 6 years ago
Alternatives and similar repositories for gsmodutils
Users that are interested in gsmodutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆34Mar 5, 2019Updated 7 years ago
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Sep 22, 2026Updated last month
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated 2 months ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Analysis of ensembles of metabolic network reconstructions☆22Sep 3, 2026Updated last month
- A lightweight App that provides all Github Workflows of a Repository in CCTray Specification.☆11Sep 27, 2024Updated 2 years ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆19Jul 8, 2025Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆22Apr 21, 2026Updated 6 months ago
- Repository of tutorials for The COBRA Toolbox☆25Aug 24, 2026Updated 2 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- ☆14Apr 14, 2026Updated 6 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆32Nov 9, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cohort definition Application Programming in R☆24Sep 23, 2026Updated last month
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- A simple CLI to obtain a GitHub App Installation Access Token☆18Mar 26, 2022Updated 4 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆33Jun 9, 2017Updated 9 years ago
- Bio-curation library for modelling cellular signalling☆10May 20, 2020Updated 6 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 10 months ago
- Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)☆14May 7, 2016Updated 10 years ago
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- FreeNAS 11 Zabbix Template☆12Aug 20, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- ☆11Apr 24, 2023Updated 3 years ago
- A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information☆13Apr 4, 2025Updated last year
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- fork from https://sourceforge.net/projects/xmsannotator/☆11Oct 30, 2022Updated 3 years ago
- Reproducible Research in Finse☆10Aug 5, 2020Updated 6 years ago
- Generate markdown tables from JSON data at the command line.☆22Jun 8, 2026Updated 4 months ago
- PySB tutorials and examples for IPython (Jupyter) notebook☆10Sep 13, 2021Updated 5 years ago
- Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.☆31Oct 5, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository of technology how-to’s and instructional content for Researchers☆11Feb 27, 2024Updated 2 years ago
- The Stable Matching or the Stable Marriage algorithm is a mathematical algorithm that finds stable matches between two equally sized sets…☆15Jul 21, 2020Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- An awesome Python SDK for interfacing with the 2600hz APIs, written by Alex Good☆11Feb 28, 2020Updated 6 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 9 months ago
- An R package for performing various cohort diagnostics.☆56Oct 22, 2026Updated last week
- Tool for reliability assessment of omics peprocessing☆12Jan 13, 2026Updated 9 months ago