HaochenW / Deep_promoterLinks
The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
☆29Updated 6 years ago
Alternatives and similar repositories for Deep_promoter
Users that are interested in Deep_promoter are comparing it to the libraries listed below
Sorting:
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆109Updated last month
- ☆95Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Updated 3 months ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆122Updated last year
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 10 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- ☆52Updated 2 years ago
- Feature map and function annotation of Proteins☆34Updated last year
- Neural networks for deep mutational scanning data☆72Updated 8 months ago
- ☆76Updated last year
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆81Updated 3 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆36Updated last year
- ☆40Updated 4 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 8 months ago
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Updated last year
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆70Updated 2 years ago
- ☆86Updated 2 years ago
- ☆99Updated 7 months ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 9 months ago
- ☆48Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year