HaochenW / Deep_promoter
The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
☆26Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for Deep_promoter
- Code repository of "Deep generative design of RNA family sequences"☆28Updated 3 months ago
- Feature map and function annotation of Proteins☆30Updated 4 months ago
- ☆63Updated last month
- ☆66Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- ☆27Updated last week
- ☆22Updated 10 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆37Updated 7 months ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- Neural networks for deep mutational scanning data☆66Updated this week
- ☆33Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- Evolutionary velocity with protein language models☆83Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆83Updated 2 months ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated last year
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- A domain parser for Alphafold models☆32Updated 10 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆25Updated 6 months ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆18Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆37Updated 3 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆62Updated last year
- ColabFold protocol☆42Updated 3 weeks ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆17Updated last year
- ☆45Updated 5 months ago
- ☆15Updated 7 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- ☆20Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated this week
- Deep learning prediction of enzyme optimum pH☆22Updated 11 months ago