The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
☆32Nov 11, 2019Updated 6 years ago
Alternatives and similar repositories for Deep_promoter
Users that are interested in Deep_promoter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆34Mar 3, 2024Updated 2 years ago
- GPro: a toolbox for Generative approaches in promoter design☆30Mar 8, 2024Updated 2 years ago
- ☆11May 3, 2017Updated 9 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14May 22, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆16Jun 19, 2023Updated 3 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Software for predicting translation initiation rates in bacteria☆34Sep 21, 2026Updated 2 weeks ago
- ☆18Aug 10, 2020Updated 6 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆38Nov 7, 2022Updated 3 years ago
- Analysis of ensembles of metabolic network reconstructions☆22Sep 3, 2026Updated last month
- Machine learning prediction of enzyme optimum pH☆27Apr 29, 2025Updated last year
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Jan 2, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆13Oct 26, 2022Updated 3 years ago
- Code repository of "Deep generative design of RNA family sequences"☆44Apr 8, 2026Updated 6 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆55Jun 19, 2023Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆138Nov 17, 2021Updated 4 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 5 years ago
- ☆33Oct 16, 2020Updated 5 years ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- ☆16Oct 7, 2025Updated last year
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Aug 12, 2026Updated 2 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Mar 13, 2024Updated 2 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆49Dec 21, 2021Updated 4 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆17Sep 19, 2024Updated 2 years ago
- ☆40Jun 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- ☆15Dec 16, 2021Updated 4 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- Few shot learning for cancer☆37Nov 17, 2021Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆14Jul 9, 2025Updated last year
- ☆15Mar 4, 2019Updated 7 years ago
- ☆12May 6, 2021Updated 5 years ago