Alternatives and similar repositories for mcell:

Users that are interested in mcell are comparing it to the libraries listed below

• mcellteam / cellblender
  Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models
  ☆64Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆61Updated last week
• msneddon / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆17Updated 9 months ago
• Luthey-Schulten-Lab / Lattice_Microbes
  ☆31Updated 3 years ago
• insilichem / pychimera
  Use UCSF Chimera Python API in a standard interpreter
  ☆58Updated 5 years ago
• Autodesk / notebook-molecular-visualization
  2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js
  ☆79Updated 6 years ago
• rasbt / siteinterlock
  A novel approach to pose selection in protein-ligand docking based on graph theory.
  ☆19Updated 8 years ago
• teamtomo / mmdf
  macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames
  ☆8Updated 3 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• ocramz / jupyter-docker-pymol
  Container-based installation of pymol, with interaction through the browser via Jupyter notebook
  ☆19Updated 5 years ago
• Pappulab / LASSI
  LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions
  ☆16Updated 2 months ago
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆65Updated last week
• nedelec / cytosim-2017
  This is an older version of cytosim, a cytoskeleton simulation engine
  ☆27Updated 3 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆28Updated last year
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated last year
• rcsb / mmtf
  The specification of the MMTF format for biological structures
  ☆44Updated last year
• choderalab / ensembler
  Automated omics-scale protein modeling and simulation setup.
  ☆52Updated 3 years ago
• chanzuckerberg / cryoet-data-portal
  CryoET Data Portal
  ☆22Updated this week
• Photon-HDF5 / phconvert
  Convert Beker&Hickl, PicoQuant and other formats to Photon-HDF5
  ☆16Updated 9 months ago
• salilab / imp
  The Integrative Modeling Platform
  ☆76Updated this week
• SBRG / MASSpy
  ☆22Updated 2 years ago
• gokceneraslan / biorxiv-sanity-preserver
  Web interface for browsing, search and filtering recent biorxiv submissions
  ☆14Updated 7 years ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆23Updated last year
• lidawei1975 / deep
  ANN based NMR peak picker
  ☆17Updated last month
• channotation / chap
  CHAP is a tool for the functional annotation of ion channel structures:
  ☆21Updated last year
• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆66Updated this week
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• kdd-ubc / MorphOT
  Transport-based interpolation of cryo-EM density maps for ChimeraX
  ☆10Updated 3 years ago
• molstar / molrender
  Create macromolecular images
  ☆30Updated 3 weeks ago
• samirelanduk / atomium
  Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
  ☆105Updated last year