mcellteam / mcell
MCell Monte Carlo Simulator of Cellular Microphysiology
☆35Updated last week
Alternatives and similar repositories for mcell:
Users that are interested in mcell are comparing it to the libraries listed below
- Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models☆64Updated last week
- Rule-based modeling framework☆62Updated 2 weeks ago
- ☆31Updated 3 years ago
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 6 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 11 months ago
- An Online Tool for the Real-Time Kinetic Analysis of Binding Events☆14Updated last month
- An epithelium simulation library☆62Updated 3 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20Updated 5 years ago
- CompuCell3D public source code repository☆67Updated this week
- Automated omics-scale protein modeling and simulation setup.☆52Updated 3 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- The python implementation of the MMTF API, decoder and encoder.☆46Updated 2 years ago
- macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames☆8Updated 4 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 weeks ago
- Benchmarking common tasks on proteins in various languages and packages☆41Updated 4 years ago
- WebGL based molecular viewer☆37Updated last month
- A primer on statistical mechanics for biochemists☆46Updated 2 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆23Updated last year
- The specification of the MMTF format for biological structures☆44Updated last year
- Python / C++ based particle reaction-diffusion simulator☆59Updated 2 years ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- ☆23Updated 2 years ago
- LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions☆16Updated 4 months ago
- The Fluorescent Protein Database☆66Updated this week
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆14Updated 10 years ago
- Molecular Query Language☆32Updated 10 months ago
- 2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js☆80Updated 7 years ago
- Web interface for browsing, search and filtering recent biorxiv submissions☆14Updated 8 years ago
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆21Updated 8 years ago