mcellteam / mcell
MCell Monte Carlo Simulator of Cellular Microphysiology
☆33Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for mcell
- Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models☆63Updated 6 months ago
- Rule-based modeling framework☆59Updated last month
- ☆32Updated 2 years ago
- Use UCSF Chimera Python API in a standard interpreter☆58Updated 5 years ago
- An Online Tool for the Real-Time Kinetic Analysis of Binding Events☆12Updated 3 months ago
- 2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js☆75Updated 6 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 8 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆18Updated 5 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 5 months ago
- Python Modeling Interface☆12Updated last week
- localCIDER - sequence analysis tool for disordered protein sequences☆22Updated last year
- 📖 mmCIF support for hybrid/integrative models☆22Updated 2 months ago
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆19Updated 7 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Updated 3 years ago
- Modelling of Mycoplasma genitalium☆56Updated 2 years ago
- An epithelium simulation library☆59Updated 8 months ago
- The Integrative Modeling Platform☆74Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- Plugin to UCSF Chimera for segmenting Cryo-EM density maps☆11Updated last year
- The Fluorescent Protein Database☆65Updated this week
- ECCpy is a program for EC50 calculation in python.☆44Updated last year
- Data visualizations for biomolecular dynamics☆17Updated 6 years ago
- Python / C++ based particle reaction-diffusion simulator☆52Updated 2 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆14Updated 10 years ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆16Updated 3 years ago
- A primer on statistical mechanics for biochemists☆46Updated 2 years ago
- Molecular Query Language☆30Updated 4 months ago
- WebGL based molecular viewer☆35Updated this week
- Transport-based interpolation of cryo-EM density maps for ChimeraX☆10Updated 3 years ago
- mmCIF Core Access Library☆38Updated last week