SBRG / GDGA_Shortcourse
Files for the Genome Design/Genome Analytics Short-course organized by the SBRG
☆10Updated 3 years ago
Alternatives and similar repositories for GDGA_Shortcourse:
Users that are interested in GDGA_Shortcourse are comparing it to the libraries listed below
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 5 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 4 months ago
- Python Implementation of Codon Adaption Index☆35Updated last year
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated 3 weeks ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆111Updated last month
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆55Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ☆22Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 5 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆152Updated 4 months ago
- UniProt Id Mapping through API☆32Updated 3 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆17Updated 2 years ago
- Protein 3D structure prediction pipeline☆68Updated this week
- ☆24Updated last year
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆26Updated 2 years ago
- a pipeline to build similarity maps of protein space☆30Updated last month
- Software for predicting translation initiation rates in bacteria☆20Updated 2 months ago
- Computation of Microbial Ecosystems in Time and Space☆21Updated 2 weeks ago
- Toolbox for including enzyme constraints on a genome-scale model.☆68Updated 3 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆18Updated 7 months ago
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆14Updated 3 months ago
- snakemake pipeline for creating trees from sequence sets☆70Updated last week
- An introductory workshop to protein language models☆12Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated 3 weeks ago
- Codon usage tables in code-friendly format + Python bindings☆35Updated this week
- Python package for building and analyzing models using ModelSEED☆20Updated 2 months ago