shenwei356 / perfect-bioinformatic-toolsView external linksLinks
What should perfect bioinformatic tools be like?
☆146Nov 2, 2025Updated 3 months ago
Alternatives and similar repositories for perfect-bioinformatic-tools
Users that are interested in perfect-bioinformatic-tools are comparing it to the libraries listed below
Sorting:
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 5 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆209Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 6 months ago
- k-mers and the like☆22Feb 9, 2026Updated last week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Aug 22, 2025Updated 5 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated last month
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 3 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- ☆25Feb 9, 2026Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Nov 18, 2025Updated 2 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45Nov 5, 2025Updated 3 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- BWT construction and search☆126Jan 14, 2026Updated last month
- Tool for exploring sequence alignment algorithms☆13Aug 30, 2024Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆205Sep 22, 2023Updated 2 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 3 months ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 3 weeks ago
- A local-haplotagging-based small and structural variant caller☆94Jan 14, 2026Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated last week
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 5 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- Rust bindings to minimap2 library☆108Feb 2, 2026Updated 2 weeks ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆84Nov 13, 2025Updated 3 months ago
- A list of software for pangenomics☆174Jan 28, 2026Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆35Updated this week
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆22Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Aug 25, 2025Updated 5 months ago
- µbinfie blog☆18Jul 21, 2025Updated 6 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Dec 9, 2021Updated 4 years ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated 2 weeks ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago