ome / omero-pyLinks
Python project containing Ice remoting code for OMERO
☆24Updated 3 weeks ago
Alternatives and similar repositories for omero-py
Users that are interested in omero-py are comparing it to the libraries listed below
Sorting:
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated last month
- Command-line client for Fractal☆46Updated last week
- Bio-Formats image file format to raw format converter☆94Updated last month
- ☆17Updated last week
- native Python dataclasses for the OME data model☆57Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆135Updated last month
- Raw format to OME-TIFF converter☆54Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆45Updated this week
- ☆37Updated last month
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆43Updated 5 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆199Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Pydantic models for OME-NGFF☆24Updated last week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆17Updated 3 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated last year
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 8 months ago
- serve Zarr datasets via HTTP☆28Updated 2 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆28Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆23Updated 4 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 3 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated 2 weeks ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆17Updated last week
- A fully scalable robust image feature extraction library.☆24Updated 2 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆40Updated 2 months ago
- A template repo used to make new napari plugins☆26Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago