ome / omero-pyLinks
Python project containing Ice remoting code for OMERO
☆24Updated last week
Alternatives and similar repositories for omero-py
Users that are interested in omero-py are comparing it to the libraries listed below
Sorting:
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated this week
- native Python dataclasses for the OME data model☆58Updated 3 weeks ago
- ☆17Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆94Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆135Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated this week
- Command-line client for Fractal☆46Updated last week
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆23Updated 4 months ago
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆200Updated this week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆17Updated 4 months ago
- ☆37Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆46Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 3 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆29Updated last year
- A template repo used to make new napari plugins☆26Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated last month
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆44Updated 5 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- GPU-accelerated Image Processing library for Python☆51Updated 3 weeks ago
- Create web-based OME-Zarr galleries☆19Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year