ome / omero-py
Python project containing Ice remoting code for OMERO
☆23Updated last week
Alternatives and similar repositories for omero-py:
Users that are interested in omero-py are comparing it to the libraries listed below
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated 2 weeks ago
- native Python dataclasses for the OME data model☆56Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- ☆17Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated 2 weeks ago
- Raw format to OME-TIFF converter☆50Updated last month
- Command-line client for Fractal☆45Updated last week
- MethodsJ2☆14Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆26Updated 10 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 2 months ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆88Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆132Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆33Updated last week
- Pydantic models for OME-NGFF☆23Updated last week
- Interface to the Bioformats Java library☆13Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- serve Zarr datasets via HTTP☆28Updated last year
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 5 months ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆14Updated 3 weeks ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆23Updated this week
- A 3D interactivity toolbox for napari☆34Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆34Updated last week