ome / omero-py
Python project containing Ice remoting code for OMERO
☆23Updated this week
Alternatives and similar repositories for omero-py:
Users that are interested in omero-py are comparing it to the libraries listed below
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated last week
- ☆16Updated last week
- Command-line client for Fractal☆45Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- Raw format to OME-TIFF converter☆50Updated 3 weeks ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆14Updated last week
- MethodsJ2☆14Updated 2 years ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated 3 months ago
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- ☆23Updated 6 months ago
- serve Zarr datasets via HTTP☆28Updated last year
- Bio-Formats image file format to raw format converter☆85Updated 2 weeks ago
- ☆35Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆39Updated last month
- Pydantic models for OME-NGFF☆23Updated last week
- ☆14Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- A relabeling tool for tiled segmentation with Dask☆15Updated 6 months ago
- ☆22Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆29Updated 2 months ago
- ☆29Updated last year
- Image registration (alignment) software for large microscopy images☆24Updated last year