ome / omero-figureLinks
An OMERO.web app for creating Figures from images in OMERO
☆17Updated 2 weeks ago
Alternatives and similar repositories for omero-figure
Users that are interested in omero-figure are comparing it to the libraries listed below
Sorting:
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated last week
- ☆39Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Jupyter Notebooks for the Image Data Resource☆18Updated last week
- Lectures for a napari training course☆51Updated 2 years ago
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆13Updated 2 years ago
- MethodsJ2☆14Updated 3 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- OMERO Docker compose example☆28Updated 4 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated 4 months ago
- ☆14Updated 4 years ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 7 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- ☆20Updated 4 years ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- native Python dataclasses for the OME data model☆62Updated this week
- Easily read and write ome-tiff images in python☆28Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 3 months ago
- ☆23Updated last month
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆11Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆40Updated 3 weeks ago
- Running compute-intense parts of BigStitcher distributed☆27Updated last week
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago