ome / omero-figure
An OMERO.web app for creating Figures from images in OMERO
☆16Updated 3 weeks ago
Alternatives and similar repositories for omero-figure:
Users that are interested in omero-figure are comparing it to the libraries listed below
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- MethodsJ2☆14Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- GIve easy, high-level access to ome-zarr fileset☆13Updated 2 weeks ago
- Browse your OMERO database from within napari.☆35Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- ☆35Updated this week
- Lectures for a napari training course☆50Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 3 months ago
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- ☆17Updated 2 years ago
- An Ilastik-like interactive pixel classifier.☆16Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- StarDist plugin for napari☆37Updated 5 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated 2 months ago
- ☆15Updated 6 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated 3 weeks ago
- ☆46Updated 4 months ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated this week
- Multiple file format reading directly into napari using pure Python☆35Updated 7 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- Python project containing Ice remoting code for OMERO☆24Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago