ome / ome2024-ngff-challengeLinks
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
☆20Updated 3 weeks ago
Alternatives and similar repositories for ome2024-ngff-challenge
Users that are interested in ome2024-ngff-challenge are comparing it to the libraries listed below
Sorting:
- ☆51Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆53Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated this week
- A napari plugin for zarr backed OME-NGFF images☆38Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆25Updated last week
- A 3D interactivity toolbox for napari☆37Updated 3 months ago
- Pydantic models for OME-NGFF☆24Updated last month
- python tools for BigDataViewer☆22Updated 9 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆35Updated this week
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆38Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 2 weeks ago
- ☆41Updated 3 weeks ago
- ☆33Updated 5 months ago
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- dask empowered fast4dreg☆15Updated 11 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆40Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- Main tasks for the Fractal analytics platform☆21Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆22Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- ☆47Updated last week
- native Python dataclasses for the OME data model☆61Updated 2 weeks ago
- Command-line client for Fractal☆47Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- 1d plotting in napari-based canvas.