ome / ome2024-ngff-challengeLinks
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
☆20Updated 2 months ago
Alternatives and similar repositories for ome2024-ngff-challenge
Users that are interested in ome2024-ngff-challenge are comparing it to the libraries listed below
Sorting:
- High quality visualization for volumetric image data☆54Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- python tools for BigDataViewer☆22Updated 11 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- Block-wise operations for large nD volumes☆43Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last month
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- A 3D interactivity toolbox for napari☆37Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 5 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Pydantic models for OME-NGFF☆24Updated 3 months ago
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- Command-line client for Fractal☆47Updated this week
- ☆41Updated last week
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- dask empowered fast4dreg☆15Updated last year
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- ☆38Updated last year
- Main tasks for the Fractal analytics platform☆22Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated this week
- ☆22Updated 2 years ago
- ☆49Updated 2 weeks ago
- native Python dataclasses for the OME data model☆65Updated last week