ome / ome2024-ngff-challengeLinks
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
☆19Updated last week
Alternatives and similar repositories for ome2024-ngff-challenge
Users that are interested in ome2024-ngff-challenge are comparing it to the libraries listed below
Sorting:
- Pydantic models for OME-NGFF☆23Updated last week
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- A 3D interactivity toolbox for napari☆34Updated last month
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- ☆43Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆40Updated last week
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- python tools for BigDataViewer☆22Updated 5 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆14Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆16Updated 2 weeks ago
- Create web-based OME-Zarr galleries☆17Updated last month
- ☆18Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 3 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- ☆20Updated 4 months ago
- ☆17Updated last week
- ilastik plugin for napari☆14Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 6 months ago
- ☆36Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆36Updated last week
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Updated last year
- ☆29Updated last year
- dask empowered fast4dreg☆11Updated 6 months ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆16Updated 2 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 2 months ago