Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
☆21May 11, 2026Updated last month
Alternatives and similar repositories for ome2024-ngff-challenge
Users that are interested in ome2024-ngff-challenge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆17Jun 20, 2023Updated 3 years ago
- ☆14May 17, 2024Updated 2 years ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Jun 25, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 9 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆22Mar 12, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Illustrations created by Henning Falk for the Zarr community☆48Jan 29, 2025Updated last year
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Jun 5, 2026Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 2 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆165Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Updated this week
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12May 4, 2026Updated 2 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 3 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Jun 30, 2026Updated last week
- Python project containing Ice remoting code for OMERO☆28Jun 16, 2026Updated 3 weeks ago
- Performance benchmarks of Zarr V3 implementations☆20Feb 8, 2026Updated 5 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jun 29, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆245Jul 1, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Jul 1, 2026Updated last week
- ☆15May 17, 2026Updated last month
- SCIFIO ImageIO plugin for ITK☆16Apr 23, 2026Updated 2 months ago
- Scientific image analysis resources and software tools.☆42Jun 15, 2026Updated 3 weeks ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated last week
- High quality visualization for volumetric image data☆61Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 11 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated last month
- A Board Game to teach co-localization analysis☆15Nov 1, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- Pydantic models for Zarr☆47Jul 2, 2026Updated last week
- A template repo used to make new napari plugins☆39Updated this week
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 3 months ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)☆21Aug 21, 2024Updated last year
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago