Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
☆21May 11, 2026Updated 3 months ago
Alternatives and similar repositories for ome2024-ngff-challenge
Users that are interested in ome2024-ngff-challenge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆17Jun 20, 2023Updated 3 years ago
- ☆14May 17, 2024Updated 2 years ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 11 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆22Mar 12, 2026Updated 5 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Aug 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- Streaming directly to Zarr on the file system or S3☆30Updated this week
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Jun 5, 2026Updated 2 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆26Feb 14, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Raw format to OME-TIFF converter☆57Jul 27, 2026Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- High quality visualization for volumetric image data☆63Updated this week
- Illustrations created by Henning Falk for the Zarr community☆48Jan 29, 2025Updated last year
- ☆11Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆169Aug 10, 2026Updated last week
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12May 4, 2026Updated 3 months ago
- Python project containing Ice remoting code for OMERO☆28Jul 30, 2026Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Aug 10, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated 11 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Aug 11, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- ☆15Apr 2, 2025Updated last year
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 10 months ago
- SCIFIO ImageIO plugin for ITK☆16Apr 23, 2026Updated 3 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Aug 3, 2026Updated 2 weeks ago
- Pydantic models for Zarr☆49Aug 5, 2026Updated last week
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated 2 months ago
- A Board Game to teach co-localization analysis☆15Nov 1, 2024Updated last year
- Performance benchmarks of Zarr V3 implementations☆22Feb 8, 2026Updated 6 months ago
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 4 months ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago