ome / ome2024-ngff-challengeLinks
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
☆20Updated 2 months ago
Alternatives and similar repositories for ome2024-ngff-challenge
Users that are interested in ome2024-ngff-challenge are comparing it to the libraries listed below
Sorting:
- High quality visualization for volumetric image data☆53Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆32Updated this week
- A 3D interactivity toolbox for napari☆37Updated 5 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- ☆41Updated this week
- Browse your OMERO database from within napari.☆39Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 3 weeks ago
- python tools for BigDataViewer☆22Updated 11 months ago
- dask empowered fast4dreg☆15Updated last year
- ☆49Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 2 weeks ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆44Updated this week
- ☆22Updated 2 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆95Updated this week
- ☆33Updated 7 months ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- Block-wise operations for large nD volumes☆43Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 5 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- native Python dataclasses for the OME data model☆64Updated last week