IDR / deploymentLinks
Deployment infrastructure for the Image Data Resource
☆13Updated last month
Alternatives and similar repositories for deployment
Users that are interested in deployment are comparing it to the libraries listed below
Sorting:
- ☆41Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated 3 weeks ago
- Python project containing Ice remoting code for OMERO☆27Updated last month
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆148Updated last week
- native Python dataclasses for the OME data model☆65Updated 2 weeks ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆218Updated last week
- Bio-Formats image file format to raw format converter☆102Updated 2 weeks ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 8 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 5 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆38Updated 3 weeks ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- Command-line client for Fractal☆47Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 4 months ago
- Discover, install, and share napari plugins☆54Updated 2 weeks ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- Pydantic models for OME-NGFF☆24Updated 3 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated last month
- Easily read and write ome-tiff images in python☆28Updated last year
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆13Updated 2 years ago
- Raw format to OME-TIFF converter☆56Updated last month
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- Read and write life sciences file formats☆142Updated 6 months ago
- GPU-accelerated Image Processing library for Python☆52Updated last week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 8 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago