IDR / deploymentLinks
Deployment infrastructure for the Image Data Resource
☆13Updated 2 months ago
Alternatives and similar repositories for deployment
Users that are interested in deployment are comparing it to the libraries listed below
Sorting:
- ☆39Updated this week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last month
- A minimal Python package for reading and validating OME-Zarr (meta)data☆33Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 2 months ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆18Updated this week
- native Python dataclasses for the OME data model☆60Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- Command-line client for Fractal☆46Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 5 months ago
- A napari plugin for zarr backed OME-NGFF images☆37Updated 2 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆202Updated this week
- GPU-accelerated Image Processing library for Python☆50Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆139Updated this week
- Discover, install, and share napari plugins☆52Updated last week
- Python project containing Ice remoting code for OMERO☆25Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆42Updated last month
- Raw format to OME-TIFF converter☆55Updated last week
- Pydantic models for OME-NGFF☆24Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆13Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆30Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆97Updated last week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆50Updated this week
- Tool for segmentation in bioimaging☆35Updated this week
- ☆22Updated 4 years ago