IDR / deployment
Deployment infrastructure for the Image Data Resource
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for deployment
- Python project containing Ice remoting code for OMERO☆22Updated 2 months ago
- native Python dataclasses for the OME data model☆53Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆15Updated 2 months ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆31Updated 7 months ago
- Resources for teaching/preparing to teach bioimage analysis☆48Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated this week
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆12Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆19Updated 2 weeks ago
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 3 weeks ago
- ☆16Updated 3 weeks ago
- Command-line client for Fractal☆45Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆38Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 4 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆21Updated 3 years ago
- A 3D interactivity toolbox for napari☆32Updated last month
- Raw format to OME-TIFF converter☆49Updated last week
- ☆33Updated this week
- A napari plugin for zarr backed OME-NGFF images☆28Updated 3 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆29Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image