IDR / deployment
Deployment infrastructure for the Image Data Resource
☆13Updated this week
Alternatives and similar repositories for deployment:
Users that are interested in deployment are comparing it to the libraries listed below
- ☆34Updated last week
- A napari plugin for zarr backed OME-NGFF images☆32Updated 3 weeks ago
- Python project containing Ice remoting code for OMERO☆24Updated 3 weeks ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated last month
- A minimal Python package for reading OME-Zarr (meta)data☆16Updated this week
- native Python dataclasses for the OME data model☆55Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆38Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 2 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆50Updated 3 months ago
- MethodsJ2☆14Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆40Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆52Updated this week
- ☆16Updated 3 weeks ago
- Bio-Formats image file format to raw format converter☆85Updated 2 months ago
- Easily read and write ome-tiff images in python☆26Updated 8 months ago
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆12Updated last year
- ☆13Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆36Updated last month
- ilastik plugin for napari☆13Updated 9 months ago
- ☆12Updated 4 years ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- python tools for BigDataViewer☆21Updated last month
- ☆24Updated last month
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆32Updated 9 months ago
- Discover, install, and share napari plugins☆51Updated this week
- Raw format to OME-TIFF converter☆49Updated 2 months ago
- Command-line client for Fractal☆45Updated this week