Jupyter Notebooks for the Image Data Resource
☆19Feb 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for idr-notebooks
Users that are interested in idr-notebooks are comparing it to the libraries listed below
Sorting:
- Curated metadata for all studies published in the Image Data Resource☆16Aug 5, 2025Updated 7 months ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- ☆14Feb 24, 2026Updated last week
- ☆15Feb 5, 2025Updated last year
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- ilastik plugin for napari☆14Updated this week
- ☆18Oct 12, 2019Updated 6 years ago
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- An OMERO.web app for creating Figures from images in OMERO☆20Feb 27, 2026Updated last week
- Sphinx-based documentation for the Open Microscopy Environment☆24Feb 27, 2026Updated last week
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- Django-based OMERO.web client☆23Feb 13, 2026Updated 3 weeks ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 5 years ago
- Morphological profiling using deep learning☆123Oct 19, 2024Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆44Jul 25, 2018Updated 7 years ago
- ☆20Feb 27, 2026Updated last week
- Jupyter notebooks using GraphQL APIs by FREYA partners☆24Dec 8, 2022Updated 3 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- ☆18Nov 25, 2025Updated 3 months ago
- ☆23Mar 26, 2021Updated 4 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- ImageJ FX is new user inferface for ImageJ☆27Apr 4, 2019Updated 6 years ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Python project containing Ice remoting code for OMERO☆28Feb 17, 2026Updated 2 weeks ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated last year
- AutoTx - an intelligent background file transfer service for Windows.☆28Feb 13, 2026Updated 3 weeks ago
- OMERO Docker compose example☆29Dec 6, 2025Updated 3 months ago
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Jun 13, 2024Updated last year
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- Running compute-intense parts of BigStitcher distributed☆30Feb 10, 2026Updated 3 weeks ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Dec 6, 2022Updated 3 years ago
- ☆14Jul 1, 2025Updated 8 months ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 4 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 9 months ago
- ☆36Sep 6, 2017Updated 8 years ago