IDR / idr-notebooksLinks
Jupyter Notebooks for the Image Data Resource
☆19Updated last month
Alternatives and similar repositories for idr-notebooks
Users that are interested in idr-notebooks are comparing it to the libraries listed below
Sorting:
- Curated metadata for all studies published in the Image Data Resource☆16Updated 4 months ago
- An OMERO.web app for creating Figures from images in OMERO☆19Updated last week
- Community-contributed and experimental CellProfiler modules.☆72Updated last week
- Methods for Image-Based Cell Profiling☆51Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- CytoData 2016 – origin story☆18Updated 8 years ago
- Schema.org Data Models for HTAN☆15Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- OMERO Docker compose example☆29Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 7 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 5 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Find profile pairs and compute retrieval metrics between them.☆21Updated 3 weeks ago
- Python API and Jupyter widget for Vitessce☆60Updated last month
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆14Updated last month
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆11Updated 2 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- CellProfiler tutorial pipelines and images☆98Updated 2 months ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Yet Another Pixel Classifier (based on deep learning)☆36Updated last year
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- QuPath extension to interactively align images☆26Updated 4 months ago