Alternatives and similar repositories for openmicroscopy:

Users that are interested in openmicroscopy are comparing it to the libraries listed below

• ome / bioformats
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…
  ☆389Updated this week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆209Updated last month
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆136Updated 5 months ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆60Updated 3 years ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆150Updated 6 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆127Updated last week
• zeiss-microscopy / libCZI
  Open Source Cross-Platform C++ library to read CZI image files
  ☆72Updated 2 years ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆86Updated 3 weeks ago
• mastodon-sc / mastodon
  Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
  ☆72Updated 3 weeks ago
• petebankhead / qupath
  QuPath - Open-source bioimage analysis for research
  ☆49Updated this week
• imagej / tutorials
  ImageJ2 programming examples
  ☆184Updated last year
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆71Updated 2 weeks ago
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆356Updated this week
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆178Updated 2 weeks ago
• bigdataviewer / bigdataviewer_fiji
  Fiji plugins for starting BigDataViewer and exporting data.
  ☆21Updated 5 months ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆91Updated 2 weeks ago
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆24Updated 2 years ago
• ome / omero-documentation
  Sphinx-based documentation for the Open Microscopy Environment
  ☆22Updated this week
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆51Updated 8 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆55Updated this week
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆69Updated 3 months ago
• trackmate-sc / TrackMate
  TrackMate is your buddy for your everyday tracking.
  ☆181Updated this week
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆35Updated last year
• ome / docker-example-omero
  OMERO Docker compose example
  ☆24Updated last year
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆36Updated last week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• bigdataviewer / bigdataviewer-core
  ImgLib2-based viewer for registered SPIM stacks and more
  ☆38Updated this week
• imjoy-team / ImJoy
  ImJoy: Deep Learning Made Easy!
  ☆188Updated last year
• ome / omero-cli-transfer
  An OMERO CLI plugin for creating transfer packets between OMERO servers.
  ☆17Updated 2 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆54Updated last week