RoysamLab / whole_brain_analysis
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for whole_brain_analysis
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Updated 4 months ago
- ☆30Updated 2 years ago
- Development of PICASSO plugin for napari☆13Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- Microsopic Image Analyzer (MIA)☆29Updated 7 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- ☆10Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- MethodsJ2☆14Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- Piecewise alignment for layers of mosaics☆20Updated 2 weeks ago
- ☆20Updated 3 weeks ago
- MorphoFeatures code and data☆18Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆33Updated 3 weeks ago
- QuPath extension for Cellsparse☆15Updated 4 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- ☆23Updated 2 months ago
- Tools for distributed alignment of massive images☆75Updated last week
- The official QuPath extension for InstanSeg☆10Updated last week
- A relabeling tool for tiled segmentation with Dask☆12Updated last month
- QuPath extension to interactively align images☆19Updated 3 months ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆11Updated 2 years ago
- ☆13Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- StarDist plugin for napari☆36Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- ☆37Updated 3 months ago