uhlmanngroup / shapeanalysis101
A tutorial of classical shape analysis methods
☆11Updated last year
Alternatives and similar repositories for shapeanalysis101:
Users that are interested in shapeanalysis101 are comparing it to the libraries listed below
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- ☆41Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 8 months ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- 3D/4D volumetric rendering of microscopy data☆21Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆25Updated 2 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 7 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- Browse your OMERO database from within napari.☆35Updated 2 weeks ago
- MorphoFeatures code and data☆19Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆22Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ☆22Updated 4 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 3 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Generate markdown notebooks from ImageJ Macro☆24Updated 3 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆15Updated 2 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆52Updated this week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆45Updated 3 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year