uhlmanngroup / shapeanalysis101Links
A tutorial of classical shape analysis methods
☆11Updated last year
Alternatives and similar repositories for shapeanalysis101
Users that are interested in shapeanalysis101 are comparing it to the libraries listed below
Sorting:
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- MorphoFeatures code and data☆21Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- dask empowered fast4dreg☆11Updated 8 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 8 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 4 months ago
- ☆49Updated this week
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 2 months ago
- Browse your OMERO database from within napari.☆38Updated last week
- A template repo used to make new napari plugins☆26Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Visualizing feature measurements on label images in napari☆10Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- StarDist plugin for napari☆40Updated 11 months ago
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- A napari plugin for itk-elastix☆39Updated last year
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 2 weeks ago
- Command-line client for Fractal☆46Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆11Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated this week