my PhD thesis
☆36Jul 10, 2019Updated 7 years ago
Alternatives and similar repositories for thesis
Users that are interested in thesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆26Sep 10, 2025Updated last year
- Substring index for paths in a graph☆64Sep 30, 2026Updated last month
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 8 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆16May 4, 2016Updated 10 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 8 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆22Jan 20, 2025Updated last year
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- BFAST: the Blat-like Fast Accurate Search Tool☆12Jan 29, 2022Updated 4 years ago
- ☆14Oct 14, 2020Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆17Jan 5, 2021Updated 5 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆26Jul 1, 2026Updated 3 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Indel-aware consensus for aligned BAM☆22Aug 16, 2025Updated last year
- BWT-based index for graphs☆72Aug 19, 2026Updated 2 months ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago