my PhD thesis
☆36Jul 10, 2019Updated 6 years ago
Alternatives and similar repositories for thesis
Users that are interested in thesis are comparing it to the libraries listed below
Sorting:
- Substring index for paths in a graph☆60Feb 10, 2026Updated 2 weeks ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated 3 weeks ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Nov 16, 2016Updated 9 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- ☆13Jan 20, 2016Updated 10 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 5 months ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- ☆24Aug 25, 2025Updated 6 months ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 9 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated last year
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- ☆10Feb 23, 2024Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Jan 20, 2025Updated last year
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆34Sep 6, 2023Updated 2 years ago
- Graph realignment tools for structural variants☆165Dec 8, 2022Updated 3 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 3 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Aug 13, 2024Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago