ekg / thesis
my PhD thesis
☆36Updated 5 years ago
Alternatives and similar repositories for thesis:
Users that are interested in thesis are comparing it to the libraries listed below
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆21Updated 5 years ago
- SV genotyping with long reads☆40Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- ☆28Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- ☆35Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 8 months ago