ekg / thesisLinks
my PhD thesis
☆36Updated 6 years ago
Alternatives and similar repositories for thesis
Users that are interested in thesis are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆35Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago