leonjessen / PepTools
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
☆18Updated 6 years ago
Alternatives and similar repositories for PepTools:
Users that are interested in PepTools are comparing it to the libraries listed below
- ☆28Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated last year
- Notes and code from a network biology study group at UMD.☆10Updated 9 years ago
- ☆15Updated last year
- 🧬 Toolkit for generating various numerical features of protein sequences☆52Updated 4 months ago
- Model-based Analysis of Protein Degradability☆10Updated 3 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆14Updated 8 months ago
- Python package and command line tool for epitope prediction☆49Updated 5 months ago
- Chemical Similarity Enrichment analysis of metabolomics datasets☆27Updated 6 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated 11 months ago
- ☆38Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated 5 months ago
- Python interface to amino acid properties and IEDB☆55Updated 3 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated 10 months ago
- 💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery☆37Updated 4 months ago
- Connect the dots in networks.☆18Updated 4 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Updated 5 years ago
- a collection of colabs useful for molecular biology☆30Updated 10 months ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆21Updated 5 years ago
- ☆13Updated 4 years ago
- Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.☆16Updated 6 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆25Updated last year
- A pragmatic interface to RDKit in R☆25Updated 5 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Updated 7 years ago
- ☆20Updated 3 months ago
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆19Updated 5 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Machine learning workflows for analyzing high-throughput protein data☆24Updated 8 years ago