nh2tran / DeepNovo-DIA
De novo peptide sequencing for DDA and DIA by deep learning
☆32Updated 4 years ago
Alternatives and similar repositories for DeepNovo-DIA:
Users that are interested in DeepNovo-DIA are comparing it to the libraries listed below
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 5 months ago
- ☆58Updated 11 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆39Updated last year
- ☆24Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆42Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated 3 weeks ago
- PDV: an integrative proteomics data viewer☆46Updated last week
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 9 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆84Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- A collection of available Python tools for Proteomics analysis☆56Updated 5 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆48Updated last week
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆12Updated 2 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆21Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆52Updated 2 weeks ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆14Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆115Updated last week
- tidymass☆54Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- R package - MSstats☆81Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated last month
- TimsR: Easy access to timsTOF Pro data from R.☆10Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆42Updated last year
- A Python interface to proteomics data repositories☆34Updated last month
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆50Updated 3 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆36Updated last month
- ☆26Updated 2 months ago
- ☆29Updated 8 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆42Updated this week