De novo peptide sequencing for DDA and DIA by deep learning
☆40Nov 26, 2020Updated 5 years ago
Alternatives and similar repositories for DeepNovo-DIA
Users that are interested in DeepNovo-DIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- Computational analysis for mass spectrometry-based proteomics data☆20Feb 22, 2026Updated 3 months ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆27May 21, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆24Feb 26, 2023Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- ☆16May 27, 2026Updated 3 weeks ago
- A context aware tool for proteasomal cleavage predictions☆16Jun 10, 2026Updated last week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- A standard library for biological research.☆37Sep 2, 2025Updated 9 months ago
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- ☆10May 8, 2026Updated last month
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Jul 13, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆127Apr 19, 2026Updated last month
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 4 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆189Jun 8, 2026Updated last week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆160May 28, 2026Updated 3 weeks ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆16Oct 17, 2024Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last month
- ☆12Jun 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A list of tools on proteomics using deep learning☆108May 14, 2026Updated last month
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Apr 21, 2026Updated last month
- Cleavage of polypeptide sequences☆12Oct 14, 2025Updated 8 months ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆17Aug 26, 2025Updated 9 months ago
- Python client for PRIDE Archive Rest API.☆40Jun 8, 2026Updated last week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆24Apr 8, 2026Updated 2 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆121Jun 8, 2026Updated last week
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated 2 months ago
- ☆14Oct 14, 2022Updated 3 years ago
- Processing and analysis of proteomics data☆17Jun 11, 2026Updated last week