KarchinLab / bigmhcLinks
BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
☆56Updated last year
Alternatives and similar repositories for bigmhc
Users that are interested in bigmhc are comparing it to the libraries listed below
Sorting:
- ☆78Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- HLA-I ligand predictor☆43Updated 8 months ago
- ☆90Updated 11 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- ☆93Updated 2 months ago
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- Code for 5UTR project☆25Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- ☆37Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 4 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 10 months ago
- ☆31Updated 4 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated last month
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- Comprehensive Python client for the Uniprot REST API☆50Updated 2 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆181Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆35Updated 4 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆20Updated last month
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106Updated 3 months ago