KarchinLab / bigmhcLinks
BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
☆53Updated last year
Alternatives and similar repositories for bigmhc
Users that are interested in bigmhc are comparing it to the libraries listed below
Sorting:
- ☆74Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆69Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- HLA-II ligand predictor.☆43Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆18Updated last year
- Comprehensive Python client for the Uniprot REST API☆50Updated this week
- Multi-class signal peptide prediction and structure decoding model.☆87Updated 4 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- Code for 5UTR project☆24Updated 2 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated 2 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆38Updated 9 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- ☆19Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- Collection of papers related to BCR repertoire analyses☆19Updated 3 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 2 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 2 months ago
- ☆29Updated 4 months ago
- HLA-I ligand predictor☆40Updated 6 months ago
- ☆88Updated 8 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- ☆26Updated 6 months ago
- Functional Embedding of Gene Signatures☆45Updated last year