Alternatives and similar repositories for bigmhc

Users that are interested in bigmhc are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆73Updated 2 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆83Updated last year
• a96123155 / UTR-LM
  ☆91Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆42Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 2 months ago
• pgmikhael / protgps
  ☆96Updated 5 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆186Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated this week
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆25Updated 2 years ago
• lulab / OligoFormer
  ☆40Updated last month
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 10 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆57Updated 3 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆22Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆84Updated 8 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆42Updated last year
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆34Updated 3 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆49Updated 2 weeks ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last week
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆53Updated 6 years ago
• TencentAILabHealthcare / DeepAIR
  ☆37Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆90Updated 2 weeks ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated last month
• VariantEffect / mavedb-api
  MaveDB API
  ☆15Updated last week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 7 months ago