BD2KGenomics / protect
☆28Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for protect
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆46Updated 5 years ago
- See the main fork of this repository here >>>☆38Updated last month
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆51Updated 7 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 8 months ago
- Analysis from kallisto paper☆32Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- ☆78Updated 10 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- A Rare Variant Caller for Array-based Genotyping☆25Updated 9 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago