BD2KGenomics / protectLinks
☆29Updated 4 years ago
Alternatives and similar repositories for protect
Users that are interested in protect are comparing it to the libraries listed below
Sorting:
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆91Updated last year
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 5 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tools for bam file processing☆55Updated 10 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- The Genome Modeling System installer☆78Updated 10 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- See the main fork of this repository here >>>☆38Updated 5 months ago