BD2KGenomics / protectLinks
☆30Updated 4 years ago
Alternatives and similar repositories for protect
Users that are interested in protect are comparing it to the libraries listed below
Sorting:
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- See the main fork of this repository here >>>☆38Updated 7 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Platypus Variant Caller☆108Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated last week
- Gene Fusion Visualiser☆51Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Updated 3 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- Genome-wide reconstruction of complex structural variants