BD2KGenomics / protectLinks
☆29Updated 3 years ago
Alternatives and similar repositories for protect
Users that are interested in protect are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆85Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- See the main fork of this repository here >>>☆38Updated 3 weeks ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- ☆20Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 3 weeks ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆68Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Assembly Based ReAligner☆73Updated 7 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year