BD2KGenomics / protect
☆29Updated 3 years ago
Alternatives and similar repositories for protect:
Users that are interested in protect are comparing it to the libraries listed below
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 7 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- ☆29Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 2 years ago