BD2KGenomics / protect
☆28Updated 3 years ago
Alternatives and similar repositories for protect:
Users that are interested in protect are comparing it to the libraries listed below
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆20Updated 7 years ago
- See the main fork of this repository here >>>☆38Updated last month
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆78Updated last month
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 3 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 7 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆51Updated 7 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- ☆51Updated 5 years ago