A context aware tool for proteasomal cleavage predictions
☆16Jul 17, 2026Updated last week
Alternatives and similar repositories for pepsickle
Users that are interested in pepsickle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆80Apr 1, 2023Updated 3 years ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆32Oct 15, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- ☆17Jul 18, 2022Updated 4 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 10 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- Detect duplicated items framework。内容排重框架。☆12Apr 30, 2015Updated 11 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 2, 2024Updated 2 years ago
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 3 years ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 7 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- An improved method for predicting toxicity of the peptides and designing of non-toxic peptides☆31May 8, 2026Updated 2 months ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Azure Functions for retrieving data from SharePoint Online, Dynamics 365, and Dynamics 365 Business Central with Entra ID app and Microso…☆15Mar 4, 2025Updated last year
- Burrows-Wheeler-Scott transform☆14Jun 7, 2013Updated 13 years ago
- Decoding the functional networks of non-model organisms☆12May 10, 2026Updated 2 months ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Jul 2, 2026Updated 3 weeks ago
- We help each other to study single-cell data☆16Jan 23, 2025Updated last year
- Explore and download data from the recount3 project☆39Apr 1, 2026Updated 3 months ago
- ☆31Dec 17, 2019Updated 6 years ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated 10 months ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- ☆15Mar 6, 2020Updated 6 years ago
- Deep learning framework for proteomics☆156Updated this week
- Memory-efficient Count-Min Sketch Counter (based on Madoka C++ library)☆27Nov 30, 2025Updated 7 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆45Mar 25, 2023Updated 3 years ago
- Learning the basics of reading and writing files in Python.☆10Mar 23, 2026Updated 4 months ago