gmx_corr converts the covariance matrix which is produced by GROMACS covar to cross correlation matrix and creates a heat map figure.
☆11Oct 11, 2022Updated 3 years ago
Alternatives and similar repositories for gmx_corr
Users that are interested in gmx_corr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyMOL Plugin for displaying polar contacts☆20Mar 11, 2019Updated 7 years ago
- ☆16Oct 28, 2019Updated 6 years ago
- ☆11Nov 22, 2024Updated last year
- some scripts for analysis of MD and CADD. And some tutorials.☆63Aug 12, 2024Updated last year
- MAW: a suite on the computation and application of Minimal Absent Words☆17Nov 1, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- For the purpose of post progressing of MD carried by gromacs☆24Jul 2, 2025Updated last year
- A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn☆13Jun 17, 2026Updated last month
- Assorted Python Scripts to accompany the gmx analysis tools☆12Jul 16, 2019Updated 7 years ago
- pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)☆11Mar 25, 2024Updated 2 years ago
- ☆14Sep 3, 2024Updated last year
- EnsembleFlex - Flexibility Analysis of Structure Ensembles☆19Sep 10, 2025Updated 10 months ago
- A Python wrapper for the UniProt Mapping RESTful API.☆16Mar 2, 2026Updated 4 months ago
- Codec for DNA data storage able to correct substitutions, deletions, insertions and fragment loss with constraint adherence.☆17Jan 14, 2025Updated last year
- ☆17Jul 15, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- pKa estimates for proteins using an ensemble approach☆31Updated this week
- ☆37Oct 14, 2024Updated last year
- ☆19Jun 11, 2026Updated last month
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 4 years ago
- Detect and characterize binding pockets from molecular simulations.☆19Mar 17, 2026Updated 4 months ago
- [PAKDD2023] Improving Knowledge Graph Entity Alignment with Graph Augmentation☆12Nov 16, 2023Updated 2 years ago
- Virus Identification☆27May 26, 2025Updated last year
- ☆15May 15, 2025Updated last year
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆23Nov 18, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 1、基于gensim的word2vec模型的训练 2、基于skip_gram模型的词向量模型的训练 3、词向量模型的评估(近义词、反义词) 4、兼容基于gensim的word2vec模型的训练、基于skip_gram模型的词向量模型的训练的增量模型的训练 5、 转换词向量☆10Jul 1, 2020Updated 6 years ago
- Updated version of Silicos-it's pharmacophore-based alignment tool (Align-it)☆15Jan 26, 2022Updated 4 years ago
- Clustering using Deep Learning (T-SNE visualization of autoencoder embeddings )☆11Mar 3, 2019Updated 7 years ago
- Program designed for DNA storage using Yin-Yang transcoding algorithm☆27May 6, 2024Updated 2 years ago
- Generate images of molecules and their properties for use in presentations and reports☆44Jul 21, 2022Updated 4 years ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆15Jan 23, 2026Updated 6 months ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆22Feb 7, 2023Updated 3 years ago
- Materials for KDD2023 tutorial: Knowledge-augmented Graph Machine Learning for Drug Discovery: from Precision to Interpretability☆23Aug 8, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 华东理工大学博士论文LaTeX模板☆21Jan 15, 2023Updated 3 years ago
- DeepSoluE☆18Sep 18, 2023Updated 2 years ago
- Pytorch implementation of the paper, "Representation Learning with Contrastive Predictive Coding", or CPC, https://arxiv.org/pdf/1807.037…☆11Oct 13, 2021Updated 4 years ago
- LLM trained to answer from your Zotero pdf/documents☆27Nov 29, 2023Updated 2 years ago
- Source code for "A Critical Re-evaluation of Neural Methods for Entity Alignment"☆16Oct 4, 2022Updated 3 years ago
- Materials from the 2022 UGM☆46Oct 31, 2022Updated 3 years ago
- An integrated negative design python library for desirable HTS/VS database design☆45Feb 9, 2023Updated 3 years ago