MannLabs / PeptDeep-HLALinks
DL model to predict HLA peptide presentation
☆14Updated last year
Alternatives and similar repositories for PeptDeep-HLA
Users that are interested in PeptDeep-HLA are comparing it to the libraries listed below
Sorting:
- ☆14Updated last year
- ☆20Updated 3 months ago
- A Python interface to proteomics data repositories☆34Updated 2 months ago
- An LC-MS/MS glycan and glycopeptide search engine☆12Updated 4 months ago
- ☆10Updated last month
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- Data Processing Kitchen Sink for proteomics data☆11Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆44Updated 3 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆12Updated 2 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆27Updated last month
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆19Updated 2 weeks ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated last week
- A label free quantification tool.☆17Updated 3 weeks ago
- ☆13Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆48Updated this week
- HUPO-PSI Standardized peptidoform notation☆18Updated 3 weeks ago
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆12Updated last year
- ☆11Updated 2 weeks ago
- A library for QC report based on MultiQC framework☆14Updated 2 weeks ago
- Code for LazyAF pipeline☆20Updated last year
- MS/MS prediction for peptides☆22Updated 4 years ago
- ☆13Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆25Updated 7 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆27Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 2 months ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year