MannLabs / PeptDeep-HLA
DL model to predict HLA peptide presentation
☆13Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for PeptDeep-HLA
- A Python interface to proteomics data repositories☆30Updated 6 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆22Updated last year
- ☆54Updated 6 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last week
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆34Updated 8 months ago
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆19Updated last week
- ☆12Updated last year
- Quantitative proteomics workflow☆15Updated 2 years ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆13Updated last year
- A library for QC report based on MultiQC framework☆14Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- Code for LazyAF pipeline☆21Updated 9 months ago
- Absolute quantification package based on quantms.io☆11Updated 3 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆16Updated last month
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆23Updated 2 years ago
- ☆14Updated 3 years ago
- python based queries for the proteomesoflife neo4j network database☆13Updated 4 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated 4 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆25Updated this week
- A package for making tree-based visualizations for embedding vectors☆9Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- ☆14Updated 5 years ago
- Package to analyze Mass Spec Data☆11Updated last year
- HLA-I ligand predictor☆29Updated 6 months ago
- A label free quantification tool.☆16Updated 5 months ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆11Updated 2 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated 3 months ago