MannLabs / PeptDeep-HLALinks
DL model to predict HLA peptide presentation
☆14Updated last year
Alternatives and similar repositories for PeptDeep-HLA
Users that are interested in PeptDeep-HLA are comparing it to the libraries listed below
Sorting:
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- An LC-MS/MS glycan and glycopeptide search engine☆12Updated 6 months ago
- A Python interface to proteomics data repositories☆34Updated last month
- ☆12Updated 2 months ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 2 years ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- ☆15Updated last year
- MS/MS prediction for peptides☆24Updated 4 years ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆13Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆13Updated last year
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated last year
- HLA-I ligand predictor☆42Updated 7 months ago
- A label free quantification tool.☆17Updated last month
- Collisional cross-section prediction for modified and multiconformational peptides☆12Updated this week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Spectral library searching using approximate nearest neighbor techniques.☆43Updated 3 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated 2 months ago
- ☆13Updated 3 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆45Updated 2 months ago
- Python package and command line tool for epitope prediction☆51Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- C++ lossless and lossy mass spectrometry compression☆13Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- CANOPUS visualization for Jupyter notebook☆20Updated 3 years ago
- ☆17Updated 6 years ago