alexarnimueller / LSTM_peptides
Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
☆72Updated 2 years ago
Alternatives and similar repositories for LSTM_peptides:
Users that are interested in LSTM_peptides are comparing it to the libraries listed below
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆57Updated 2 weeks ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆50Updated 3 weeks ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆71Updated 8 months ago
- ☆105Updated 2 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- ☆34Updated 3 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆89Updated 8 months ago
- A simple Python library to generate model peptides☆81Updated 4 years ago
- RosettaDesign using PyRosetta☆30Updated 5 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆79Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆85Updated last year
- Paratope Prediction using Deep Learning☆59Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- PyDock Tutorial☆30Updated 6 years ago
- ☆63Updated last month
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 11 months ago
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆49Updated 2 years ago
- ☆68Updated 4 years ago
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆84Updated 3 years ago
- Set of useful HADDOCK utility scripts☆51Updated 7 months ago
- ☆38Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆28Updated 3 weeks ago
- Calculation of interatomic interactions in molecular structures☆73Updated 3 years ago
- Predict the binding affinity of protein-protein complexes from structural data☆120Updated 5 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆68Updated 7 months ago