gagneurlab / spectralis
☆13Updated 3 months ago
Alternatives and similar repositories for spectralis:
Users that are interested in spectralis are comparing it to the libraries listed below
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆38Updated 11 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆58Updated 2 months ago
- ☆17Updated 4 months ago
- ☆12Updated 7 months ago
- Python package for investigating the structural context of PTMs☆28Updated 3 weeks ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆12Updated 5 months ago
- ☆13Updated last year
- Deep learning framework for proteomics☆114Updated last week
- A deep learning toolkit for mass spectrometry☆69Updated 6 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- modular & open DIA search☆57Updated this week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆34Updated 3 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆26Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆79Updated 3 weeks ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆22Updated 3 months ago
- Democratizing ML in proteomics☆34Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆40Updated last week
- A list of tools on proteomics using deep learning☆90Updated 8 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆120Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆37Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆53Updated last week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆46Updated this week
- ☆56Updated 8 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated this week
- MS/MS prediction for peptides☆22Updated 4 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆28Updated last year
- A collection of available Python tools for Proteomics analysis☆52Updated 5 years ago
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago