gagneurlab / spectralisLinks
☆14Updated 11 months ago
Alternatives and similar repositories for spectralis
Users that are interested in spectralis are comparing it to the libraries listed below
Sorting:
- ☆20Updated 7 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 3 weeks ago
- Deep learning framework for proteomics☆131Updated 2 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆25Updated 11 months ago
- A deep learning toolkit for mass spectrometry☆82Updated last year
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆154Updated this week
- Democratizing ML in proteomics☆43Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆48Updated last week
- ☆15Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- ☆12Updated last year
- Python package for investigating the structural context of PTMs☆28Updated 8 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- modular & open DIA search☆75Updated this week
- Python framework for Deep Learning in Proteomics☆30Updated last month
- A list of tools on proteomics using deep learning☆105Updated last year
- An LC-MS/MS glycan and glycopeptide search engine☆13Updated last week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated 10 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 weeks ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆19Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated 2 weeks ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆23Updated 7 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week