Next-generation sequencing analysis pipelines & scrips
☆10Nov 25, 2020Updated 5 years ago
Alternatives and similar repositories for ngs
Users that are interested in ngs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 11, 2023Updated 3 years ago
- Somatic variant identification from unpaired samples☆16Jan 31, 2017Updated 9 years ago
- ☆13Jul 13, 2026Updated last week
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 6 months ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- The Onion Name System - academic literature☆14Sep 1, 2016Updated 9 years ago
- Benchmarking of CNV calling tools☆19May 18, 2019Updated 7 years ago
- PGxPOP☆18Jan 25, 2023Updated 3 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- ☆25Aug 24, 2025Updated 11 months ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Mar 22, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆46Nov 18, 2019Updated 6 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 7 months ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Jan 21, 2020Updated 6 years ago
- Text mining for pharmacogenomic associations for PharmGKB☆28Nov 4, 2022Updated 3 years ago
- Make coverage plots from bam files!☆15Mar 17, 2026Updated 4 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆26Jun 22, 2026Updated last month
- Snakemake tutorial materials☆19Mar 9, 2020Updated 6 years ago
- Modern JavaScript Web Development Cookbook, published by Packt☆31Jan 18, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Nov 14, 2022Updated 3 years ago
- VAPr: A Python package for NoSQL variant data storage, annotation and prioritization☆36Jun 30, 2021Updated 5 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- R package for inferring copy number from read depth☆33Sep 30, 2022Updated 3 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 9 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple examples of Monte Carlo and MCMC☆20May 14, 2014Updated 12 years ago
- A set of tutorials for msprime and tskit.☆21Jun 19, 2026Updated last month
- Features Based Conformational Clustering of MD trajectories. See details at:☆11Nov 20, 2025Updated 8 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 11 years ago
- Model-based clustering package for mixed data☆13May 21, 2026Updated 2 months ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆20Apr 19, 2016Updated 10 years ago
- Data and analysis scripts for understanding molecular entropies, including conformer flexibility☆13Mar 29, 2021Updated 5 years ago