Alternatives and similar repositories for ngs

Users that are interested in ngs are comparing it to the libraries listed below

• ucdavis-bioinformatics-training / 2018-June-RNA-Seq-Workshop
  Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
  ☆16Updated 6 years ago
• AndolfoG / HRP
  The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …
  ☆10Updated last year
• Janaksunuwar / AMR_prediction
  A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …
  ☆12Updated 2 years ago
• RussellGrayxd / Phylogenetics
  Phylogenetic analyses code
  ☆10Updated 5 years ago
• icbi-lab / downloader
  Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)
  ☆9Updated 3 months ago
• ding-lab / VirusScan
  VirusScan Pipeline
  ☆11Updated 5 months ago
• adigorla / xgap
  xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …
  ☆11Updated 4 years ago
• KHP-Informatics / NGS_Workshop_Advanced_Bioinformatics
  ☆13Updated 4 months ago
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆22Updated 3 weeks ago
• ANHIG / IPDMHC
  Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute
  ☆14Updated 5 months ago
• elakatos / NeoepProcessing
  Collection of scripts for pre- and postprocessing neoantigen discovery calls.
  ☆9Updated 5 years ago
• LadnerLab / PepSIRF
  PepSIRF: Peptide-based Serological Immune Response Framework
  ☆10Updated 2 months ago
• CBC-UCONN / RNA-seq-with-reference-genome-and-annotation
  ☆23Updated 5 months ago
• naznoosh / MSA
  ☆9Updated 4 years ago
• bharani-lab / WES-Benchmarking-Pipeline_Manoj
  Benchmarking of aligners and variant callers for Whole Exome Sequencing data
  ☆19Updated 6 years ago
• brandonsie / epitopefindr
  R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
  ☆16Updated last year
• rli012 / BioinfoHub
  ☆12Updated 3 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆10Updated 4 years ago
• jfnavarro / hla_pipeline
  DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
  ☆11Updated 4 years ago
• erhard-lab / grandR
  R package for nucleotide conversion sequencing data analysis
  ☆13Updated 5 months ago
• isglobal-brge / SNPassoc
  Genetic association studies
  ☆16Updated 8 months ago
• BGI2016 / PSSMHCpan
  A novel PSSM based software for predicting class I peptide-HLA binding affinity
  ☆17Updated 8 years ago
• TheJacksonLaboratory / PDX-Analysis-Workflows
  ☆12Updated 6 years ago
• diegommcc / digitalDLSorteR
  digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
  ☆13Updated 8 months ago
• PSSUN / CircCode
  A Python3-base pipeline for translated circular RNA(circRNA) identification
  ☆16Updated 3 years ago
• jrderuiter / snakemake-rnaseq
  RNA-seq workflow for Snakemake based on STAR and featureCounts.
  ☆21Updated 6 years ago
• ICBI / neoantigeR
  a R package to identify neoantigens from NGS data
  ☆19Updated 8 years ago
• kbvstmd / ProGeo-neo
   a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
  ☆24Updated 3 years ago
• jyyu / ScreenBEAM
  Gene-level meta-analysis of high-throughput functional genomics (RNAi or CRISPR) screens.
  ☆9Updated 8 years ago
• snakemake-workflows / dna-seq-neoantigen-prediction
  Snakemake workflow for neoantigen prediction
  ☆14Updated last year