Alternatives and similar repositories for ngs:

Users that are interested in ngs are comparing it to the libraries listed below

• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆20Updated last month
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆31Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• ucdavis-bioinformatics-training / 2018-June-RNA-Seq-Workshop
  Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
  ☆16Updated 6 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆10Updated 3 years ago
• SFGLab / ConsensuSV-pipeline
  Automatised pipeline of ConsensuSV workflow.
  ☆23Updated last year
• jrderuiter / snakemake-rnaseq
  RNA-seq workflow for Snakemake based on STAR and featureCounts.
  ☆20Updated 5 years ago
• icbi-lab / downloader
  Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)
  ☆8Updated 3 years ago
• PSSUN / CircCode
  A Python3-base pipeline for translated circular RNA(circRNA) identification
  ☆16Updated 2 years ago
• bharani-lab / WES-Benchmarking-Pipeline_Manoj
  Benchmarking of aligners and variant callers for Whole Exome Sequencing data
  ☆19Updated 6 years ago
• KHP-Informatics / NGS_Workshop_Advanced_Bioinformatics
  ☆12Updated 11 months ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• naznoosh / MSA
  ☆9Updated 4 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 2 years ago
• knausb / vcfR_documentation
  Documentation for vcfR
  ☆11Updated 2 years ago
• ANHIG / IPDMHC
  Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute
  ☆14Updated 3 weeks ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 8 months ago
• TheJacksonLaboratory / CloudNeo
  CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
  ☆19Updated 5 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆51Updated 9 months ago
• BGI2016 / PSSMHCpan
  A novel PSSM based software for predicting class I peptide-HLA binding affinity
  ☆17Updated 8 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• CBC-UCONN / RNA-seq-with-reference-genome-and-annotation
  ☆20Updated 3 weeks ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆18Updated 2 years ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 8 months ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆15Updated last year
• rli012 / BioinfoHub
  ☆12Updated 2 years ago
• ding-lab / BICSEQ2
  BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
  ☆16Updated 3 years ago