nh13 / TMAPLinks
Torrent Mapping Alignment Program
☆20Updated 12 years ago
Alternatives and similar repositories for TMAP
Users that are interested in TMAP are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- ☆35Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Updated 8 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- VNTR annotation using motif selection☆39Updated last week
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆38Updated 2 weeks ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago