Snakemake with pytest example
☆11Jul 18, 2020Updated 6 years ago
Alternatives and similar repositories for snakemake-pytest
Users that are interested in snakemake-pytest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Just another minhash implementation.☆13May 28, 2026Updated 2 months ago
- ☆19Dec 6, 2022Updated 3 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 weeks ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆19Aug 11, 2026Updated last week
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆14Feb 11, 2021Updated 5 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- Searching large collections of sequencing data with genome-scale queries☆19Aug 3, 2026Updated 2 weeks ago
- ☆11Sep 7, 2023Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Python language bindings for bwa☆12Jul 19, 2026Updated 3 weeks ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Aug 10, 2026Updated last week
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Nov 3, 2022Updated 3 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆14Feb 23, 2018Updated 8 years ago
- RUVprps enables accurate and scalable RNA-seq normalization without prior knowledge of biological and unwanted variation☆14Jun 11, 2026Updated 2 months ago
- API for HOMER in R for Genomic Analysis using Tidy Conventions☆19Dec 1, 2021Updated 4 years ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 6 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TF Binding and Expression Target Analysis 2☆22Nov 19, 2025Updated 8 months ago
- ggplot to loon☆28Jun 12, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 weeks ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆26Aug 17, 2024Updated 2 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- Torrent Mapping Alignment Program☆20Mar 2, 2013Updated 13 years ago
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Estimation of solar and wind power generation potentials in Europe.☆11Mar 25, 2022Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 4 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- ☆18Jul 2, 2026Updated last month
- ☆11Nov 24, 2025Updated 8 months ago
- REvoSim - The [R]apid [Evo]lutionary [Sim]ulator - An individual-based evolutionary model☆24Jul 16, 2026Updated last month