Snakemake with pytest example
☆11Jul 18, 2020Updated 5 years ago
Alternatives and similar repositories for snakemake-pytest
Users that are interested in snakemake-pytest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- ☆19Dec 6, 2022Updated 3 years ago
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 3 months ago
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆13Feb 11, 2021Updated 5 years ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆15Dec 23, 2025Updated 3 months ago
- Fast, accurate and scalable normalization for RNA sequencing data with the RUVprps software package.☆12Feb 23, 2026Updated last month
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python language bindings for bwa☆12Mar 27, 2026Updated 3 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Nov 3, 2022Updated 3 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 9, 2026Updated last week
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆13Feb 23, 2018Updated 8 years ago
- ggplot to loon☆27Jun 12, 2025Updated 10 months ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 6 months ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- step by step tutorial in the website☆33Feb 22, 2025Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 2 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Estimation of solar and wind power generation potentials in Europe.☆11Mar 25, 2022Updated 4 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆30Updated this week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- ☆10Nov 24, 2025Updated 4 months ago
- An unofficial Beamer template based on the original PPTX UGM Template☆10Feb 19, 2026Updated 2 months ago
- REvoSim - The [R]apid [Evo]lutionary [Sim]ulator - An individual-based evolutionary model☆23Feb 3, 2026Updated 2 months ago