Burrows-Wheeler Transform and FM-index in golang
☆21Apr 7, 2023Updated 3 years ago
Alternatives and similar repositories for bwt
Users that are interested in bwt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A port of Stream VByte to Go☆35Feb 22, 2022Updated 4 years ago
- ggplot2 geom for QR codes☆16Jul 27, 2021Updated 5 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- ☆15Oct 22, 2026Updated last week
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- HiFi error modeler and simulator with ploidy☆12Feb 12, 2026Updated 8 months ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A lightweight and high-performance bioinformatics package in Golang☆98Oct 18, 2026Updated 2 weeks ago
- A Rust implementation of SSHash☆20Oct 19, 2026Updated last week
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Nov 22, 2022Updated 3 years ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Torrent Mapping Alignment Program☆20Mar 2, 2013Updated 13 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- An implementation of Golomb compressed set in C☆23Aug 2, 2016Updated 10 years ago
- Teaching modules for Human Genome Variation Lab.☆22Jun 6, 2025Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆46May 13, 2026Updated 5 months ago
- Make SVG figures out of the Burrows-Wheeler Matrix and various auxiliary text-space and BWT-space structures☆12Oct 14, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- biogo high throughput sequencing repository☆133Aug 28, 2025Updated last year
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 3 years ago
- ☆11Feb 2, 2021Updated 5 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 4 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated 2 years ago
- biogo is a bioinformatics library for Go☆409Mar 28, 2024Updated 2 years ago
- Ultrafast identification of signature sequences in microbial genomes☆26Updated this week
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Nov 20, 2025Updated 11 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Mediates connections between an active-only FTP client (such as ftp.exe) and a server and allow it to transfer data passively.☆10Mar 29, 2018Updated 8 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- Easy to define segments in y-axis for 'ggplot2'.☆27Oct 6, 2019Updated 7 years ago
- A replacement for the suffix array packaged with Go. It builds a suffix array from a string, and can compute the longest repeated or non-…☆10Jan 16, 2016Updated 10 years ago