shenwei356 / bwt
Burrows-Wheeler Transform and FM-index in golang
☆20Updated last year
Related projects ⓘ
Alternatives and complementary repositories for bwt
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 3 years ago
- example applications built using bíogo☆18Updated 3 years ago
- ☆12Updated last year
- bíogo data store repository☆38Updated 3 years ago
- Go implementation of ntHash☆20Updated 3 years ago
- biogo high throughput sequencing repository☆125Updated 7 months ago
- Reader and writer of HDF5 files☆18Updated 7 years ago
- Bioinformatic infrastructure libraries☆76Updated 4 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 5 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 4 years ago
- Fast and cache-efficient full-text pangenome index☆25Updated this week
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Go / Golang Bioinformatics Library☆40Updated 3 weeks ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11Updated 6 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆15Updated 8 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated last year
- Go port of wyhash v3☆13Updated 2 years ago
- Histosketching Using Little Kmers☆55Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 years ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- MetaCarvel: A scaffolder for metagenomes☆13Updated last month
- workflow and resource management system for bioinformatics data analysis☆69Updated 4 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 4 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆80Updated 8 months ago
- open files for buffered reading and writing in #golang☆61Updated 2 years ago
- succinct labeled graphs with collections and paths☆15Updated 5 years ago
- Yet Another CWL Engine by Golang☆18Updated 5 years ago