arq5x / bedtools-python
A Python interface to the BEDTools API using Cython
☆28Updated 14 years ago
Alternatives and similar repositories for bedtools-python:
Users that are interested in bedtools-python are comparing it to the libraries listed below
- An awk-like VCF parser☆56Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- A 3'-end adapter contaminant trimmer☆93Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆52Updated 7 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- ☆78Updated 11 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- NextSeq specific bcl2fastq2 wrapper.☆53Updated 3 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 4 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- ☆16Updated 8 years ago
- A powerful toolset for genome arithmetic.☆141Updated 3 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- ☆82Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- ☆57Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago