Alternatives and similar repositories for fast5

Users that are interested in fast5 are comparing it to the libraries listed below

• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 8 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 5 years ago
• LooseLab / bulkvis
  ☆49Updated 7 months ago
• jgurtowski / nanocorr
  Error correction for Oxford Nanopore data
  ☆47Updated 4 years ago
• marcus1487 / nanoraw
  Genome guided re-segmention and visualization for raw nanopore sequencing data.
  ☆46Updated 6 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆48Updated 4 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• scottgigante / picopore
  A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
  ☆31Updated last year
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆63Updated 4 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆66Updated 2 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆74Updated 6 months ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• TGAC / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆33Updated 6 years ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆61Updated 6 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 10 months ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆56Updated 7 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆105Updated 2 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆66Updated 10 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• mw55309 / Kraken_db_install_scripts
  Updated Kraken DB install scripts to cope with new-ish NCBI structure
  ☆47Updated 8 years ago
• relipmoc / skewer
  ☆94Updated 2 years ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 9 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆76Updated 3 weeks ago
• i5K-KINBRE-script-share / Irys-scaffolding
  scripts to parse IrysView output
  ☆39Updated 9 years ago