lindenb / samtools-utilities
Utilities for Samtools ( http://samtools.sourceforge.net/ )
☆18Updated 13 years ago
Alternatives and similar repositories for samtools-utilities:
Users that are interested in samtools-utilities are comparing it to the libraries listed below
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- sort genomic data☆35Updated 4 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure